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XMIPP is an image processing suite for 3D-reconstruction of biological specimens from transmission electron microscopy data. NOTE that stable releases (including binaries) are longer stored at Sourceforge, but are available at http://xmipp.cnb.csic.es
CaspLab - Comet Assay Software Project Lab is a cross-platform image analysis software to measure level of DNA damage in SCGE (Single Cell Gel Electrophoresis) method called also comet assay method.
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Avian Freeware Suite (AFS) provides two things: Developers with libraries for Java Swing Widgets, XML handling, Fortran95 and Pascal; End users (Medical students, doctors, scientists) with productivity tools they can use (quizzes, XML databasing & PDF)
spmjob is a free batch processing toolbox for SPM 2 (Statistical Parametric Mapping). It supports preprocessing, parameter estimation, contrasts and second level analysis. spmjob has both flexible scripting support and a user friendly GUI.
OpenVL is a framework for handling, processing & visualizing volumetric data (CT, MRI etc). It provides: powerful data access & layout API, plugins for volume processing tasks (image processing, segmentation etc), and support for multiple file-formats.
Sled stands for SLice EDitor. It aims to be the ultimate tool for viewing and editing 3D volume datasets. Those working in the field of volume visualization will appreciate this tool a lot!