Showing 80 open source projects for "sector"

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  • 1

    PyTRiP

    Python bindings and GUI for TRiP98

    A python class and GUI for visualization of data generated by the medical treatment planning software TRiP. Project has been moved to http://github.com/pytrip/pytrip on 15.06.2016
    Downloads: 0 This Week
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  • 2
    This is a sophisticated & integrated simulation and analysis environment for dynamical systems models of physical systems (ODEs, DAEs, maps, and hybrid systems). It supports symbolic math, optimization, continuation, data analysis, biological apps...
    Downloads: 1 This Week
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  • 3
    BioImageXD - free open source software for analysis, processing and 3D rendering of multi dimensional, multi data channel, time series image data from microscopy and other sources.
    Downloads: 0 This Week
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  • 4
    Gadgetron

    Gadgetron

    Medical Image Reconstruction Framework

    Medical Image Reconstruction Framework
    Downloads: 0 This Week
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  • 5
    SPADE

    SPADE

    A toolkit for developing and deploying protein structure algorithms.

    The Structural Proteomics Application Development Environment is a Python tool kit for developing and deploying bioinformatics applications. Handles graphics, analysis, and modeling of protein sequence and structure. Source and Win installers available. SPADE source code can be cloned from http://www.github.com/deaconjs/SPADE.
    Downloads: 0 This Week
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  • 6
    Bika Open Source LIMS

    Bika Open Source LIMS

    Web based Open Source laboratory information management system (LIMS)

    Modern Open Source LIMS (Laboratory Information Management System) · Professionally supported by experts The Bika code was migrated to https://github.com/bikalims Getting Started: https://github.com/bikalims/bika.lims/blob/main/README.md Modern Bika releases are built on the Senaite LIMS core, the LIMS that originated as a Bika fork. It is therefore as new and modern as Senaite, frequently upgraded and has many very useful add-ons. Bika expands on Senaite's lean design by adding...
    Downloads: 0 This Week
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  • 7
    OpenCMISS-Zinc

    OpenCMISS-Zinc

    A Library for Interactive Modelling and Visualisation

    The OpenCMISS-Zinc Library (opencmiss.org/zinc), or Zinc, is a software library for building interactive graphical modelling and visualisation applications. Models are represented in Zinc as mathematical fields defined over domains, including finite elements with support for high-order basis functions, complex parameter mappings and time variation, and image-based fields. Further fields can be defined by mathematical expressions and algorithms on existing fields, including image...
    Downloads: 0 This Week
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  • 8
    DeDAY

    DeDAY

    MLE survival analysis: Gompertz, Weibull, Logistic and mixed morality.

    DeDAY (Demography Data Analyses) is a tool of analyzing demography data. It supports Gompertz, Weibull and Logistic distributions. DeDay also supports mixed mortality models based on these distribution such as the Gompertz-Makeham distribution. Distributions such as Gompertz describes only age-dependent mortality, which increases over time. Mixed mortality models, such as in Gompertz-Makeham distribution, consider a more general case where mortality is consist of both age-dependent and...
    Downloads: 0 This Week
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  • 9
    PACS VM

    PACS VM

    ISO - Customized version of dcm4chee 2.17.3 for MySQL.

    1. Add JBoss Application Server 4.2.3.GA for JDK 6. 2. Cleanup for Windows and deprecated files. 3. Off CONSOLE records - http://forums.dcm4che.org/jiveforums/thread.jspa?messageID=4787
    Downloads: 0 This Week
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  • 10

    Ablator

    A tool for automating laser ablations for neuroscience

    Ablator is a suite of software that automates the microscopic detection of cell targets and also directs a 2-photon microscope to lesion these targets in arbitrary patterns for neuroscience research. See Hayes et al 2012 for an example of its usage (http://www.pnas.org/content/109/21/8286.abstract).
    Downloads: 0 This Week
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  • 11
    An input GUI for parameterizing simulation with the LSD Simulator
    Downloads: 0 This Week
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  • 12
    PROJECT MOVED: see http://www.vmtk.org for up-to-date information. Libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis in image-based blood vessel modeling.
    Downloads: 0 This Week
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  • 13

    niftilib

    ** MAIN SITE IS NOW: https://github.com/NIFTI-Imaging/nifti_clib **

    niftilib is a collection of i/o routines for the nifti1 neuroimage data format. C (nifticlib), Java (niftijlib), Matlab (niftimatlib), and Python (pynifti) code is available. For nifti format info see: http://nifti.nimh.nih.gov/
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    Downloads: 47 This Week
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  • 14

    cancer_dynamics

    Cancer Dynamics web

    Website that shows the dynamics of a tumor by solving a system of ordinary differential equations. The results are two kind of graph images, and a gif file, being all of them available for download as a compressed file.
    Downloads: 0 This Week
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  • 15
    Febrl (Freely Extensible Biomedical Record Linkage) does data standardisation (segmentation and cleaning) and probabilistic record linkage ("fuzzy" matching) of one or more files or data sources which do not share a unique record key or identifier.
    Downloads: 4 This Week
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  • 16
    PyBact is an open source software written in Python for Bacterial Identification. The software generates simulated data matrix which accurately represents the probabilistic positive/negative results of the tested biochemical test.
    Downloads: 4 This Week
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  • 17
    The goal of the See&Touch project is to design/implement a special mouse for disabled people, which allows a person to fully control a computer by using just vision and one single body movement. This project develops hardware, firmware and software.
    Downloads: 0 This Week
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  • 18
    PyExPsiN is a Python crossplatform (Linux/Windows) module for made easy writing psychological experiments. Right now includes functions for DMTS (Delayed Matching to Sample), N-Back, Spatial N-Back, "Grammatical", Mixed Dots, Stroop, and more.
    Downloads: 0 This Week
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  • 19
    ptsa (pronounced pizza) stands for Python Time Series Analysis. A python module specifically designed with neural data in mind (EEG, MEG, fMRI, etc...), but applicable to almost any type of time series.
    Downloads: 0 This Week
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  • 20
    PocketAnalyzerPCA combines a geometric algorithm for detecting pockets in proteins with Principal Component Analysis and clustering. This enables visualization and analysis of pocket conformational distributions of large sets of protein structures.
    Downloads: 0 This Week
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  • 21
    """ E-Cell's source code repository has moved to GitHub! https://github.com/ecell The development of E-Cell now continues on GitHub. The Subversion repository was abandoned. """ E-Cell System is an object-oriented software suite for modeling, simulation, and analysis of large scale complex systems such as biological cells. It allows many components driven by multiple algorithms with different timescales to coexist in a model.
    Downloads: 0 This Week
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  • 22
    Free-text deidentification tools.
    Downloads: 0 This Week
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  • 23
    PyTuneSounds is a application that lets the user tune the volumes of sounds in a variety of ways, e.g. to use these in psychoacoustic experiments. It is possible to correct the spectrum of the sound with respect to equipment-inherent filters.
    Downloads: 0 This Week
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  • 24
    Naimath (syn. blessing) is a project to create tools for diagnosis, management of clinical cases in the form of Rule based Medical Expert System integrating Interactive Health education, Semantified EMR, and serve as a learning tool for students. Website seen at www.naimath.com
    Downloads: 0 This Week
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  • 25
    qips is a software package for analyzing ChIP-seq ("Chromatin ImmunoPrecipitation on sequencing") data. It finds enriched regions of arbitrary lengths and is therefore especially suited for analyzing ChIP-seq of histone marks or polymerase.
    Downloads: 0 This Week
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