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Human protein similarity network used to predict drug safety.
This is the protein similarity network - PSIN. Here, the nodes are human proteins and they are linked only if they share considerable sequence similarity.
We found that this network is particularly useful to distinguish approved from problematic drug-targets.
Here you also find the complete set of programs and datasets we used for this purpose.
Free to help further test and develop this project. Your help and expertise are much appreciated !
If you have any questions, please do not...
ClinStudyWeb is designed to provide a flexible infrastructure for managing patient and assay data from clinical studies. It uses a plugin system for study-specific web forms and arbitrarily complex test classifiers, and supports XML import/export.
The package provides SVM models to be used with SVMlight (http://svmlight.joachims.org/) for drawing a consensus out of individual 3rd-party predictions about the effect of mutations. The 3rd party tools are SIFT, Polyphen2, SNPs&GO and Mutation Assessor.
The package also provides a series of Perl modules and scripts to assist in the preparation of data. The modules can be used to build custom tools and pipelines, whereas the scripts provide basic executable implementations based on the...
From desk booking and visitor management, to space planning and office utilization data, Eptura Workplace helps your entire organization work smarter.
With the world of work changed forever, it’s essential to manage your workplace and assets together to effectively create a high-performing environment. The Eptura experience combines the power of workplace management software with asset management, enabling you to effectively operate your building and facilitate hybrid work.
SOAPsv: is a program for detecting the structural variation
This is an approach that complements previous methods for reliable homozygous structural variation identification. Our approach accurately determines genotype and breakpoints relative to a reference genome based on de novo assembly of Illumina Genome Analyzer sequencing data. In this method, we examined only homozygous structural variations because detecting heterozygous structural variations requires assembly of haplotype sequences, which is not yet possible using existing assemblers.
This project contains MEDEUR related software projects. This project is initiated by
the Openkaart-community (http://www.openkaart.org),
NedHIS,
NICTIZ (http://www.nictiz.nl) .
CNV-WebStore is an integrated platform to analyse, store, visualise and interpret CopyNumber Variation data. Analysis is supported for Illumina data, all CNV-reports and raw data can be imported after third-party analysis. Contact system admin at http://cnv-webstore.uantwerpen.be for installation scripts
DEPRECATED PROJECT! SolexaTools is becoming the SeqWare project (http://seqware.sourceforge.net) to better reflect its expanded sequencer support. Please go to this project page for code and documentation.
http://genetik.charite.de/hoffmann/easyLINKAGE/index.html for most recent versions! easyLINKAGE is a GUI for automated setup/performance of linkage analyses/simulation programs (FastLink, SuperLink, SPLink, GeneHunter-/PLUS, Allegro, PedCheck, SimWalk).
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Web Based Hospital Information System i.e for quality assurance (bedsore, decubitus ulcer) in Germany. Written in Perl and tested on MySQL. Works with HTML templates. Easy to modify. Available from any workstation through a Browser. Modular and scalable.
HomGL is a web-based tool for comparing gene lists obtained e.g. by
microarray studies. Unigene, Locus Link & Homology databases are used
to compare gene lists with different accession numbers and between different
organisms.
DICOM.pm is a Perl library allowing interpretation of DICOM-compliant medical image files. It can be used by applications to transfer, interpret, and archive DICOM files.
Tapeworm is a Gnome-desktop health profiler. Keep track of your diet, including calories and %'s of fat, carbs, and protein, exercise, blood glucose, weight, and anything else! Easily produce user configurable plots and printable reports.
A database driven PHP based web site designed to provide a performance analysis tool of DICOM picture archiving traffic. This tool is designed for PACS administrators working in a hospital environment trying to understand their performance bottleneck. T