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MOLGENIS can be used to generate databases for life science experiments (micrroarray, mass spectrometry, genomics) having a web userinterface, csv exchange format, and programmatic interfaces (web services, rest, and r-project). See NatRevGen 8.
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Taverna is *no longer* hosted on SourceForge, but has moved to the Apache Software Foundation: https://taverna.apache.org
These pages and mailing list archives are provided for *archival purposes* for older Taverna 1.x releases.
See https://taverna.apache.org/download/ for the latest releases from Apache Taverna.
A Python function library to extract EEG feature from EEG time series in standard Python and numpy data structure. Features include classical spectral analysis, entropies, fractal dimensions, DFA, inter-channel synchrony and order, etc.
Quantitative Evalution of Blush: a program to assess myocardial reperfusion on coronary angiograms. This program calculates a value that can be used for risk classification of STEMI patients or as a surrogate endpoint in clinical trials.
BCIOP is a free, open and portable protocol standard for data exchnage with Brain Computer Interface devices. Compact deisgn allows its code to be easily implemented both on target microcontroller and the host computer.
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i-PUT is an implementation PCD ACM profile proposed by the IHE (Integrating the Healthcare Enterprise). This profile describes a way to integrate the alarms generated by Patient Care Devices (PCD) using HL7.
Yawi 3D (Yet Another Wand for ImageJ) implements a 3D selection tool plugin for ImageJ suitable for CT scanned images; it helps in the selection of 3D Region Of Interest (ROI) containing a tumor mass; it also provides a measure of ROI volume
The aim of this project is to facilitate the development of open source software for the acceptance testing of commonly used PET (positron emission tomography) systems in accordance with published NEMA standards.
JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.
Java GUI to analyze one (or more, in batch mode) datasets with several feature selection methods at the same time and also performing an "ensemble" analysis. It can be easily extended to include any feature selection algorithm.
While resting-state fMRI is drawing more and more attention, there has not been a software for its data analysis. Based on MATLAB, we developed a package named REST. Currently REST has three main functions: function connectivity, ReHo and ALFF.
Diabetes management software written for mono/.net. The software is written with a plug-in architecture. Input Plugins read data from different devices/files, and Analize plugins create a pdf report of that data.
This project aims to make open source tools for medical Studies of Diagnostic Accuracy, wich are neglected by most commom statistical tools.
Most tools will be based on the STARD.
The Tomographic Image Reconstruction Interface of the Universite de Sherbrooke (TIRIUS) is a Qt-based user-interface software for reconstructing 3D images from data generated by real apparatus or generated by the GATE Monte Carlo simulator.
SPKtool is a toolbox developed on MATLAB which enables a user to perform spike (action potential of neurons) detection, spike sorting (manually or automatically) and spike train analysis.
Open Screening Environment is a open source system for management of High Throughput Screening related experiments. The platform consists of new research tools that will enhance significantly management and analysis of HTS data. More information can be f
The Health Manager Java SDK is an interface definition to connect wireless medical devices with a Java application. It includes also an implementation that simulates real devices and a sample application demonstrating the usage.
Referent Tracking (RT) is a novel approach to store data in electronic (health) records by referring to real world entities by means of a unique ID. The RT System is a back-end that uses RDF as a representation, but adds to it a referential semantics.
QuickDicom is an easy to use dicom medical imaging package for Mac OSX, providing QuickLook, Spotlight, Quartz Composer, Window/Level and a dicom file analyzer. Also included is the iiDicom Framework for image/dictionary usage in Objective C and Python.
WebPagesChanges provides a platform for complete, easy and high accuracy marking of updated information in web pages. The user, with one click, can check for new information and see the update status by the colored mark of the information and their pages