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Obsolete project - archived at
https://github.com/darrenleeweber/bioelectromagnetism
This is a public release of a Matlab toolbox for working with data from electroencephalography (EEG/ERP) and magnetic resonance imaging (MRI). It contains functions to process and visualize ERP/MRI data and associated electrode positions.
Computer Controlled Optical Microscopy is a package to enable camera equipped microscopes to generate multi-modal time-lapse image sequences
of 3D volumes. This is achieved by periodically changing optical settings, xyz positions and acquiring images.
A set of games and other applications for the Hoppolek platform, a research project aimed at giving gravely handicapped children a possibility to move and play, while also helping to strengthen their bone structure and normalize their muscle tonus.
The AMC Postprocessing Package is a program developed at the Academic Medical Center in Amsterdam. It allows readings and writing of the DICOM format, and also supports the Analyze format. Currently, perfusion and fMRI analysis are implemented.
HIPAA compliant medical billing, scheduling, and account management system. Integrated with x12 standard electronic transactions, OpenBilling XML standards, and hcfa-1500 legacy support. Complete cross platform performance with java 2 standards.
The LabVIEW application toolkit for phasic heart rate analysis in psychophysiological research incorporates a variety of tools for offline extraction and analysis of heart rate data.
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This project will develop cross-platform Java software for interfacing with EEG devices, specifically hardware developed by the OpenEEG project (http://openeeg.sourceforge.net/).
spmjob is a free batch processing toolbox for SPM 2 (Statistical Parametric Mapping). It supports preprocessing, parameter estimation, contrasts and second level analysis. spmjob has both flexible scripting support and a user friendly GUI.
DICOM.pm is a Perl library allowing interpretation of DICOM-compliant medical image files. It can be used by applications to transfer, interpret, and archive DICOM files.
NeoBio is a Java class library of Computational Biology Algorithms. The current version consists mainly of pairwise sequence alignment algorithms such as the classical dynamic programming methods of Needleman-Wunsch and Smith-Waterman.
Skipper is a powerful accessibility package for Linux which enables severely physically disabled people with many different conditions to make full use of applications that normally require good mouse and keyboard control.
BlochLib is an expression template library of generic data structures and algorithms to perform large scale nuclear magnetic resonance classical and quantum mechanical spin simulations, with many I/O capabilities,and integrated numerical routines.
Real-time EEG data acquisition and control software for event related
potential (ERP) researchers. Writes data in ERPSS (UCSD) raw and log
format and displays, in real time, in X windows.
Ulysses is a next-generation software for the calculation and visualization of electric and magnetic fields as emitted by electric objects like transformer stations, high voltage transmission lines and sub-terrain cables.
A java based neural network framework. The Auratus network is built around an XML messaging system, allowing for a complete MVC design. Additionally, Auratus networks are constructed and at the node/edge level, allowing for advanced topologies.
Overfoldix is a distribution of Linux designed to boot off of a CD and run in a ramdisk, not requiring a Hard Disk Drive. This linux distro is used to help out in the Folding@Home distributed computing project. This is a \'better\' OS for Folding@Home
GUI based application dedicated to researchers of time series data
in various areas. Features: realtime modification and visualization
of data records, redlining, independent scaling in x/y.
OpenVL is a framework for handling, processing & visualizing volumetric data (CT, MRI etc). It provides: powerful data access & layout API, plugins for volume processing tasks (image processing, segmentation etc), and support for multiple file-formats.
Dr. Jekyll is an interactive voxel editor for viewing and editing three-dimensional images. It is specifically aimed at postprocessing of segmented datasets, but offers some functionality for raw data as well.
Tapeworm is a Gnome-desktop health profiler. Keep track of your diet, including calories and %'s of fat, carbs, and protein, exercise, blood glucose, weight, and anything else! Easily produce user configurable plots and printable reports.