Search Results for "gnu" - Page 4

MOLGENIS can be used to generate databases for life science experiments (micrroarray, mass spectrometry, genomics) having a web user interface, csv exchange format, and programmatic interfaces (web services, rest, and r-project). See NatRevGen 8.

a Java library designed to manage genotype and clinical data underlying complex diseases

OpenClinica is a web-based electronic data capture platform for clinical research. See http://www.OpenClinica.org/ for downloads, documentation, and mailing lists.

A Java application used in whole genome analysis to display SNPs in a genomic context. Supplementary data is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks.

PubCurator is a biomedical text mining platform and validation helper built on top of Eclipse RCP.

Software for three-dimensional visualization of DICOM images based on java

ClinicWeb is a complete Health Information System (EHR - Electronic Health Medical Record); it access MySQL Database over Internet or local network; developed in Java - © 2008 - UNIFESP / Paulo Salomao, Amilton Martha, Carlos J R Campos, Daniel Sigulem

EEG-Holter - Designed for analysis of long-term EEG - Holter. Java developed, it supports medical and logbook anotations, epileptic events data, graphics and EDF files. UNIFESP © 2009 - Aristides Tavares dos Santos, Prof. Dr. Carlos J R Campos.

PACS - a system for managing and maintaining Radiology images. RIS - Radiology Information System for automating workflow in a Radiology Department. PACS/RIS - the union of the two.

This is a small application in Java helping to find DICOM tags meanings by tag values or DICOM tag codes by meaning.

QSAR is a project that aims to build a GUI that enables people to build quantitative structure activity (or property) relationship models. It will use parts of CDK (cdk.sf.net), JOELib (joelib.sf.net), R (www.r-project.org) and other projects.

Taverna is *no longer* hosted on SourceForge, but has moved to the Apache Software Foundation: https://taverna.apache.org These pages and mailing list archives are provided for *archival purposes* for older Taverna 1.x releases. See https://taverna.apache.org/download/ for the latest releases from Apache Taverna.

Chipster is a biologist-friendly analysis software for high-throughput data. It contains over 200 analysis tools for next generation sequencing (NGS), microarray and proteomics data. Users can combine tools in automatic analysis workflows, which can be shared. Chipster's interactive visualizations allow users to select datapoints and create new gene lists. For NGS data Chipster contains a built-in genome browser, which highlights SNPs and automatically indexes BAM files and calculates...

DEPRECATED PROJECT! SolexaTools is becoming the SeqWare project (http://seqware.sourceforge.net) to better reflect its expanded sequencer support. Please go to this project page for code and documentation.

dicom related framework and applications in java. The project is divide in 3 parts, the framework, a dicom toolkit, and dicom apps.

Quantitative Evalution of Blush: a program to assess myocardial reperfusion on coronary angiograms. This program calculates a value that can be used for risk classification of STEMI patients or as a surrogate endpoint in clinical trials.

This software is related to ST-Guide project, an initiative arisen at the Institute of Computing of State University of Campinas (IC-UNICAMP) to solve the practice guideline formalization and implementation problems.

The Magnetic Resonance Spectroscopy Toolkit is an open-source software toolkit for processing and analyzing MRS data.

Yawi 3D (Yet Another Wand for ImageJ) implements a 3D selection tool plugin for ImageJ suitable for CT scanned images; it helps in the selection of 3D Region Of Interest (ROI) containing a tumor mass; it also provides a measure of ROI volume

Software tools for visual psychophysics research. The focus of these tools is amblyopia research, but they can be used in some related visual neuroscience research tasks.

JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.

A Java argumentation tool kit. Calculate the Dung acceptability of an argument given a source of conflicting arguments, with this library.

ScreeningAssistant is a software based on JOELib and dedicated to the management of chemical databases. It allows the user to select a set of compounds for screening tests (High Throughput Screening or Virtual Screening).

This projects concentrates software for setting up a chemical dictionary website.

Java GUI to analyze one (or more, in batch mode) datasets with several feature selection methods at the same time and also performing an "ensemble" analysis. It can be easily extended to include any feature selection algorithm.