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Quantitative Evalution of Blush: a program to assess myocardial reperfusion on coronary angiograms. This program calculates a value that can be used for risk classification of STEMI patients or as a surrogate endpoint in clinical trials.
Yawi 3D (Yet Another Wand for ImageJ) implements a 3D selection tool plugin for ImageJ suitable for CT scanned images; it helps in the selection of 3D Region Of Interest (ROI) containing a tumor mass; it also provides a measure of ROI volume
Mirth Connect is an open source cross-platform HL7 interface engine that enables bi-directional sending of HL7 messages between systems and applications over multiple transports.
JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.
ScreeningAssistant is a software based on JOELib and dedicated to the management of chemical databases. It allows the user to select a set of compounds for screening tests (High Throughput Screening or Virtual Screening).
Java GUI to analyze one (or more, in batch mode) datasets with several feature selection methods at the same time and also performing an "ensemble" analysis. It can be easily extended to include any feature selection algorithm.
This project aims to make open source tools for medical Studies of Diagnostic Accuracy, wich are neglected by most commom statistical tools.
Most tools will be based on the STARD.
The goal of the GeneText project is the development of a software package that will enable users to dynamically generate an information summary page from multiple sources given a search term. Fields of interest are biology, genetics and bioinformatics.
WebPagesChanges provides a platform for complete, easy and high accuracy marking of updated information in web pages. The user, with one click, can check for new information and see the update status by the colored mark of the information and their pages
Large set of functions for biological records (ECG, EEG, phono), datastore, datamining and analysis (HRV, QT, RR, ST). The application is written in Java, so that it is assumed to work on all devices. It runs as a desktop or client-server application. It
Indivo is a distributed, web-based, personally controlled health record system that is accessible to the nomadic user and built to public standards. The Indivo project includes a pluggable web services API, web-based UI, data subscription framework, etc.
Natural Family Planning(NFP)/Fertility Awareness(FA) mobile (j2me,midp 1.0/2.0) application. Supports basal-body temperature, mucus/ovulation and calendar methods. Optimized for daily storing of records with the ability to display complex graph analysis.
jCpSim (Java CardioPulmonary Simulations) is a set of Java
packages for simulation of human physiology (respiration,
circulation, ...) and of medical therapy (ventilation, ...).
Creation of user interfaces and therapy optimization is supported.
J2ME program for calculating Body Mass Index (BMI).
The formula is:
BMI = weight / (height ^ 2)
weight can be expressed in the unit kg or libbra
height can be expressed in the unit meter or inch
InfusionMonitor is a suite to sample, store and view the activity of medical infusion pumps. It currently supports Terumo pumps, and includes a TE-372 pumps simulator to try it out without the need for a real pumps network.
Comprehensive Meta Prediction and Annotation Services for Proteins: The new all-in-one prediction tool that can be easily extended to include any SOAP/WSDL-enabled prediction servers. A concise user interface lets you use the results instantly.
A deterministic pandemic influenza simulator. Computes the effect of interventions like antiviral treatment of cases and social distancing. To be used for pandemic preparedness planning by health care offices. OS-independent Java/SWT/RCP/Applet.
PING is a distributed, web-based, personally controlled electronic medical record system that is accessible to the nomadic user and built to public standards. The PING project includes a pluggable web services API and numerous client applications.
Manuelito is a Java tool for decrypting posttranslational modification (PTM) patterns of proteins based on MALDI mass spectrometry spectra. It was built for analysing the 'histone code' but it can be applied to any other highly modified protein.
Avian Freeware Suite (AFS) provides two things: Developers with libraries for Java Swing Widgets, XML handling, Fortran95 and Pascal; End users (Medical students, doctors, scientists) with productivity tools they can use (quizzes, XML databasing & PDF)
Microarray Explorer (MAExplorer) is a Java microarray data-mining bioinformatics program.
It includes data management, graphics, statistics, clustering, reports, gene data-filtering, user
written MAEPlugins, documentation, tutorials, demo data.