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OpenTAPAS: Technology Assisted Practice Application Suite (TAPAS) is a term that describes digital tools that assist physicians deliver care in a paper based office. OpenTAPAS builds upon the HL7 compliant Electronic Medical Summary Standard
GELLO is an ANSI-accredited HL7 standard for creating computable, unambiguous clinical queries. This project creates an open source compiler and client-server IDE. Projects are stored in a subversion repository, and created by the RCP based client.
InfusionMonitor is a suite to sample, store and view the activity of medical infusion pumps. It currently supports Terumo pumps, and includes a TE-372 pumps simulator to try it out without the need for a real pumps network.
Comprehensive Meta Prediction and Annotation Services for Proteins: The new all-in-one prediction tool that can be easily extended to include any SOAP/WSDL-enabled prediction servers. A concise user interface lets you use the results instantly.
A deterministic pandemic influenza simulator. Computes the effect of interventions like antiviral treatment of cases and social distancing. To be used for pandemic preparedness planning by health care offices. OS-independent Java/SWT/RCP/Applet.
This software system serves as both a DICOM image viewer as well as a diagramming tool for collaborating notes on the given image sets. This my Computer Science graduate thesis project at Loyola Marymount University.
Microarray Explorer (MAExplorer) is a Java microarray data-mining bioinformatics program.
It includes data management, graphics, statistics, clustering, reports, gene data-filtering, user
written MAEPlugins, documentation, tutorials, demo data.
Mens is a collection of simple, easy to use menstruation calendars for a number of platforms. So far, there is one for mobile devices like PDAs and cell phones that can run Java programs.
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openSputnik is a robust distributed platform for massive scale precalculation of genetic and genomic data using contemporary bioinformatics methods. Annotated DNA, RNA and protein sequences are stored as binary objects in a variery of relational database
OpenEMed is a distributed healthcare and medical information framework based on open standards including those of HL7 and the healthcare taskforce of the OMG. These standards include identity management, observation access, access, and terminology.
Thea, Tools for High-throughput Experiment Analysis, is an integrated information processing system dedicated to the annotation of data issued from classification systems with biological information coming from a knowledge base.
DataServer is an XML gateway for medical applications. Using Apache Cocoon and Java, it supports SQL, SOAP, HTTP for patient record aggregation, provides distributed caching, custom views, audit, security, and de-identification/anonymization.
A set of games and other applications for the Hoppolek platform, a research project aimed at giving gravely handicapped children a possibility to move and play, while also helping to strengthen their bone structure and normalize their muscle tonus.
NeoBio is a Java class library of Computational Biology Algorithms. The current version consists mainly of pairwise sequence alignment algorithms such as the classical dynamic programming methods of Needleman-Wunsch and Smith-Waterman.
A java based neural network framework. The Auratus network is built around an XML messaging system, allowing for a complete MVC design. Additionally, Auratus networks are constructed and at the node/edge level, allowing for advanced topologies.
Health Education Assets Library: a national, publicly accessible digital library designed to facilitate uploading, cataloging, retrieval, and metadata exchange of multimedia items for health sciences education.
this java project creates a simple user interface with some basic statistical tools to access the Eye Express(tm) Eye tracker hardware. Including serial port access, etc.
The purpose of the project is to develop a quantitative medical imaging & visualization program for use on brain MR, DTI and MRS data. It is a joint project of the Kennedy Krieger Institute & the Johns Hopkins University, Psychiatric Neuroimaging Lab
This project consists of modifications to the i2b2 core project management cell in order to increase the security of the authentication information passed to the client. These changes are being considered for the next core release.