SIVIC is an open-source, standards-based software framework and application suite for processing and visualization of DICOM MR Spectroscopy data. Through the use of DICOM, SIVIC aims to facilitate the application of MRS in medical imaging studies.
MatNMR is a highly flexible toolbox for processing 1D and 2D NMR/EPR spectra in MATLAB and creating high-quality 1D, 2D or 3D plots. Fully GUI and/or script-based.
Graphical Interface for Medical Image Analysis and Simulation
GIMIAS is a workflow-oriented environment for solving advanced biomedical image computing and individualized simulation problems, which is extensible through the development of problem-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Physiome community while allowing business-friendly technology transfer and commercial product development.
Matlab toolbox to run a GLM on graph theoretic properties in MRI data
...The toolbox also provides a data processing path for resting state fMRI data. Several options for partialing nuisance signals are available, including local and total white matter signal (Jo et al., 2013), calculation of Saad et al. (2013)'s GCOR, and the use of Chen et al. (2012) GNI method to determine whether global signal partialing is needed.
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3D medical image platform for visualization and imageprocessing. Segmentation with Levels sets. Surface reconstruction with marching Cubes, texture Mapping and Raycasting,DICOM support. Integration environment for VTK, ITK and vtkInria3D under wxWidgets
FluoroCorrect is a Matlab-based, open source software package designed for correcting image deformations introduced by X-ray image intensifiers in fluoroscopy images. All tools in this package are scriptable, allowing for batch processing.
The Flexible Registration and Evaluation Engine (f.r.e.e.) allows the composition, evaluation and optimization of imageprocessing/registration algorithms. It also aims to boost the exchangeability and comparability of data and algorithms in research.
kradview is a viewer of images obtained for some different sources: X-ray, NMR and all DICOM-compatible imaging devices. Its aim is to be a complete platform for medical imaging and imageprocessing.
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ImLib3D is a C++ library and visualisation system for 3D imageprocessing. It contains most basic imageprocessing algorithms, and some more sophisticated ones. ImLib3D images are STL-compliant templated containers. Keywords: Medical, MRI, Brain