Showing 18 open source projects for "base-files"

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  • 1
    Grassroots DICOM

    Grassroots DICOM

    Cross-platform DICOM implementation

    Grassroots DiCoM is a C++ library for DICOM medical files. It is accessible from Python, C#, Java and PHP. It supports RAW, JPEG, JPEG 2000, JPEG-LS, RLE and deflated transfer syntax. It comes with a super fast scanner implementation to quickly scan hundreds of DICOM files. It supports SCU network operations (C-ECHO, C-FIND, C-STORE, C-MOVE). PS 3.3 & 3.6 are distributed as XML files. It also provides PS 3.15 certificates and password based mecanism to anonymize and de-identify DICOM...
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    Downloads: 243 This Week
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  • 2
    Quick DICOM Tag Editor

    Quick DICOM Tag Editor

    View and edit DICOM tags (Windows & Mac & Linux)

    * General description - View and modify DICOM tags of a single file - View and modify DICOM tags from multiple files - Dump DICOM tags into a text file - Preview images (DICOM pixel data) * Update history - All update history list have been moved to the Wiki page
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    Downloads: 63 This Week
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  • 3
    DcmStoreService

    DcmStoreService

    A lightweight and robust Dicom server to receive/store medical images

    Dicom storage service - DcmStoreService is a lightweight and robust package for implementing the Dicom Storage SCP Service. The application (C++ compiled) runs on computer as automatic MS Windows system service (24 hrs). It has a variety of customizable options.
    Downloads: 0 This Week
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  • 4
    SimPET

    SimPET

    A web platform for the MC simulation of realistic brain PET data

    .../txusser/simpet (New version pre-alpha) You can also upload your own phantoms to simulate. Currently the platform incorporates MC models for the GE Advance, GE Discovery ST and Siemens mCT. More models are on the way. You can also access all the previously simulated datasets from the dev team to test your quantification pipeline (Files section in this page). This project is an open collaboration between IDIS (www.idisantiago.es), Qubiotech (www.qubiotech.es), and FGUMA (www.fguma.es).
    Downloads: 0 This Week
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  • 5
    fcGENE: Genotype  format converter

    fcGENE: Genotype format converter

    Format converting tool for genotype Data (e.g.PLINK-MACH,MACH-PLINK)

    Main application is twofold: first to convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM, second to transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST. Readable file formats: plink-pedigree (ped and map), plink-raw, plink-dosage, mach , minimac, impute, snptest, beagle and bimbam. Similarly all kinds of imputation of outputs are also accepted. Formats which can be generated by...
    Downloads: 5 This Week
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  • 6
    3DBrainExplorer is a lightweight OpenGL-based 3D renderer for scientific visualization of volumetric data (NIfTI) featuring real-time image manipulation, AAL brain labels (Tzourio-Mazoyer et al., 2002), SPM5 statistical images and stereo display.
    Downloads: 1 This Week
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  • 7

    HybridHL7 (HL7 File Viewer)

    Make reading of Hl7 Files Simple and easy.

    Hybrid HL7 is a hl7 file viewer that loads the file into a tree that breaks down the entire file into Segments, Components, and Sub-Components.It makes the reading of the files simple by making it so you don't need to count the pipes any more. I will be adding more features and improvements so please post some reviews and include ideas on features that would be nice to include.
    Downloads: 0 This Week
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  • 8

    noise-free-cnv

    program for analyzing and manipulating DNA microarray data

    ... and the simultaneous inspection of LRR and BAF values are amongst the most frequent applications of this software. This program is able to read and write files suitable for PennCNV or raw files containing measured values of any kind.
    Downloads: 0 This Week
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  • 9

    WaveSorter

    A powerful, versatile tool for offilne spike analysis and sorting

    ... properties (width, etc.) can be saved to disk in simple text files. WaveSorter is written in C++, utilizes the GNU Scientific Library for all computation, and is highly parallelized; on modern hardware it can handle files containing several 100,000s of waveforms per channel with almost no noticeable loss in GUI fluidity and <1sec lags for files with >1,000,000 waveforms per channel. It can be run in batch mode. It supports a wide array of binary file formats as well as ASCII text.
    Downloads: 0 This Week
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  • 10
    DICOM Anonymizer replaces the patient names in all the DICOM files in a folder (and sub-folders) with other strings you assigned. Works as a batch and works fast. Supports number index. Anonymizing is required for medical image processing.
    Downloads: 12 This Week
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  • 11
    The tool aims the use of OpenCL and VTK for rapid volume reconstruction based on DICOM images, and compare the different volumes (sequences recorded pre- and postoperative).
    Downloads: 0 This Week
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  • 12
    Analyze 7.5 (img/hdr) files are used by many medical imaging packages for data export. This small script converts these Analyze 7.5 image files to comma delimited text files, which are suitable for down stream applications.
    Downloads: 0 This Week
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  • 13
    TARIS (Tree Analysis and Representation of Isopotential Surfaces) is a software package designed for molecular similarity purposes in the field of Computational Chemistry. Users are allowed to compare molecules through their MEP loading .cube files.
    Downloads: 0 This Week
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  • 14
    ES32 is a windows program for the analysis of EEG data files as produced by the NEUROSCAN (tm) Acquire application.
    Downloads: 6 This Week
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  • 15
    The Genetic Architecture Framework is intended to explore and experiment with artificial life techniques using a genetic base for the physical and neural networks for the brain, in a game based simulated world.
    Downloads: 0 This Week
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  • 16
    BASE is a database server to manage (locally) the massive amounts of data generated by microarray analysis. It handles biomaterials, raw data and images, and provides integrated and plug-in-able normalization, data viewing and analysis tools.
    Downloads: 0 This Week
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  • 17
    Stereologist assists the medical researcher in the classification of microscopic tissue samples captured as digital image files. The data collected can then be exported to a spreadsheet for further analysis.
    Downloads: 0 This Week
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  • 18

    Dualword-PMC

    PMC browser

    PubMed Central browser. Source code: http://github.com/dualword/dualword-pmc/
    Downloads: 0 This Week
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