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As of 2018-06-28, this project has moved to https://github.com/AdamaJava. This copy of the code will remain but all new code updates and releases will be from the new site.
Java code developed by the Australian ICGC team for operating on next-generation sequencing data. This code is currently being maintained and expanded by the QIMR Berghofer Genome Informatics team (http://www.qimrberghofer.edu.au/lab/genome-informatics/)
More details and documentation can be found on the...
Graph Processing Framework for Medical Information
Gpf4Med is a graph processing framework for clinical data, which can leverage from previously existing medical database and Cloud computing facilities to address large-scale studies.
This project aims the requirement of managed informations / documents in the treatment of patients, i.e. integrated care. The underlaying data model implements standards of electronic health recording, the project is based on a SQL db and Java EE framework. This is currently a student driven project for educational purposes.
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unGrid is an open source framework for distributed medical imaging. The system consists of a computing grid that harnesses idle CPU cycles from existing workstations, and a framework to execute jobs on that grid.
HELEN is a flexible framework to support the computer-based management of Clinical Practice Guidelines (CPG). It covers the whole life-cycle of a guideline, providing methods and tools for each step (from development to clinical use).
Avenzoar is a one-year exploration of renal cell carcinoma morphology and its related single nucleotide polymorphisms (SNPa) as a method of automating diagnosis of cancer by using a computer-aided decision tree controlled by analytical statistics.
It's a modern take on desktop management that can be scaled as per organizational needs.
Desktop Central is a unified endpoint management (UEM) solution that helps in managing servers, laptops, desktops, smartphones, and tablets from a central location.
The Disease Simulation Framework (DiSiF) represents a spatial simulation environment for infectious viral disease spread. The framework currently embodies a very simple framework for simulation in 2D space with focus on SARS and the Common Flu.
MobHealth is an extensible mobile health framework/API written in JavaME. The current version supports two sensor-data formats (e.g. used by AliveTec). It already provides higher-level classes for data recognition like body position or hypoxia-detection.
Indivo is a distributed, web-based, personally controlled health record system that is accessible to the nomadic user and built to public standards. The Indivo project includes a pluggable web services API, web-based UI, data subscription framework, etc.
OpenEMed is a distributed healthcare and medical information framework based on open standards including those of HL7 and the healthcare taskforce of the OMG. These standards include identity management, observation access, access, and terminology.
Role Manager is a security management framework based on the NIST model for Role Based Access Control (RBAC) and the Java[TM] 2 Platform security standards. The access control policies and the RBAC Model are implemented using the RBAC profile of XACML.
OntoCardio is an initiative to build ontologies for the legacy Cardio Database (Resource of bioinformation on cardiovascular diseases). SMI's Protege and its OWL plug-in has been adopted as the ontology construction and programming framework.
A java based neural network framework. The Auratus network is built around an XML messaging system, allowing for a complete MVC design. Additionally, Auratus networks are constructed and at the node/edge level, allowing for advanced topologies.
Cooperative effort to develop a Java-XML API and architecture to manage and share health concepts and processes eficiently. Includes a framework to develop healthcare applications (from PDA reminders to hospital information systems) quickly and easily.