Search Results for "written in java"

This package includes BBMap, a short read aligner, as well as various other bioinformatic tools. It is written in pure Java, can run on any platform, and has no dependencies other than Java being installed (compiled for Java 6 and higher). All tools are efficient and multithreaded. BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and numerous large indels. ...

The Chemistry Development Kit (CDK) is a scientific, LGPL-ed library for bio- and cheminformatics and computational chemistry written in Java. The main home page of the CDK is now at: http://cdk.github.io

MyOscar is a personal health record system. This project contains both the data storage server as well as a client / patient UI for accessing the data. Other data access clients can be / have been written, the Oscar EMR is one such client. The sourceforge myoscar-users@lists.sourceforge.net is the main mail list and form of communications for this project. The sourceforge Tickets system is the bug and feature tracker for this project. The sourceforge git repository is not the...

Healthcare Information System (EHR EMR PMS) for small hospitals and clinics. Scheduling, Orders, Meds, Pharmacy, Clinical Doc, HL7, Billing & more. Broad commercial support. Distributed clinical system written in pure Java with toolset to customize.

The BE-Calculator is a Java application, written to ease the average diabetic's life. It currently only calculates how many I.U. you have to inject, but aims at providing a full, multilingual diabetic's diary. This project has been superseded by GGC!

MobHealth is an extensible mobile health framework/API written in JavaME. The current version supports two sensor-data formats (e.g. used by AliveTec). It already provides higher-level classes for data recognition like body position or hypoxia-detection.

Large set of functions for biological records (ECG, EEG, phono), datastore, datamining and analysis (HRV, QT, RR, ST). The application is written in Java, so that it is assumed to work on all devices. It runs as a desktop or client-server application. It

Frida is image analysis software. Frida was developed by the Johns Hopkins University Tissue Microarray Core Facility. It is open source and written in 100% Java. Frida makes use of functionality from the NIH's ImageJ application. Note: Frida was integr

Microarray Explorer (MAExplorer) is a Java microarray data-mining bioinformatics program. It includes data management, graphics, statistics, clustering, reports, gene data-filtering, user written MAEPlugins, documentation, tutorials, demo data.

Crossplatform menstruation calender with dynamic pdf-report-generation via server-script. The calender is intended for the CLDC profile and MIDP1.0 - like mobile phones, PDA and is written in J2ME. The server allows dynamic upload and pdf-generation and

Pattern recognition system written in Java. Provide statistical informations about satellite and medical imagery; and also recognize symbols in a gaussian blur.

JisM is a multi-threads program allowing users to perform segmentation's tasks on a picture. Users could add new segmentation methods as JisM's plugins. Plugins can be written in Java or in Python.

The VIA Imaging Application (VIA) is an open-source Diagnostic Imaging Viewer based on open standards such as IHE, JPEG 2000 and JPIP, and DICOM. VIA is written in Java and is composes of a series of client-server applications.

This is a collection of different little tools written in MATLAB, JAVA, Python. They all have to to do with Imaging & Microscopy for life science research and related topics or problems. Some of them are meant to be used with ImageJ and MicroManager.

A numerical library designed for n-dimensional image-processing written in Java.