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A Matlab/GNU Octave package for dynamic box models
A Matlab/GNU Octave package for dynamic box models with any number of species and compartments. Box models are useful to study the dynamics of chemicals within systems that can be described by different compartments (e.g. environmental systems).
Website that shows the dynamics of a tumor by solving a system of ordinary differential equations.
The results are two kind of graph images, and a gif file, being all of them available for download as a compressed file.
Nengo is a suite for building and simulating models of large neural networks. It is based on Eliasmith & Anderson's Neural Engineering Framework, which provides a coherent theory of computation, representation, and dynamics in neural circuits.
sispread allows to simulate the dynamics of an hypothetic infectious disease within a contact network of connected people. It is intended to help people concerned by public health to easily perform epidemic simulations and to analyze their results.
runsbml - Pathway Simulation Tool emulates the dynamics of biological pathways by calculating concentrations of biochemical compounds at different times and conditions.
MagCAD is a set of tools for reconstructing 3D meshes from medical images such as MRI scans and ultra-sound. Resulting meshes are designed for CFD and visualisation