Showing 13 open source projects for "batch text processing"

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  • 1
    SDF Merger

    SDF Merger

    Desktop application for merging multiple SDF files into a single SDF

    ...The tool provides an graphical interface to merge multiple SDF files containing chemical structures and properties into a single consolidated file. Key Features: 1. User-Friendly GUI: Clean, professional interface with corporate branding 2. Batch Processing: Automatically finds and merges all SDF files in a selected folder 3. Real-time Progress Tracking: Visual progress bar and status updates during merging Technical Specifications: 1. Language: Python 3 2. GUI Framework: Tkinter 3. Chemistry Library: RDKit for chemical data processing 4. File Formats: Input/Output in SDF format Citation Md. ...
    Downloads: 1 This Week
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  • 2
    TIES

    TIES

    A smart search engine for medical documents

    TIES (Text Information Extraction System) is a clinical text search engine that uses Natural Language Processing techniques to extract medical concepts from free text clinical reports. It provides secure de-identified access to this information and has in built collaboration tools and honest broker functionality. It is licensed for academic use under the BSD license.
    Downloads: 0 This Week
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  • 3
    SIVIC
    SIVIC is an open-source, standards-based software framework and application suite for processing and visualization of DICOM MR Spectroscopy data. Through the use of DICOM, SIVIC aims to facilitate the application of MRS in medical imaging studies.
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    Downloads: 14 This Week
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  • 4
    MatrixUser

    MatrixUser

    A Multi-functional GUI-based Program for Image Processing and Analysis

    The MatrixUser project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MatrixUser/ Most of the medical images (e.g. CT, MRI, PET, etc.) comprises multiple frames which represent slices, phases, timing etc. from the same imaging object. Those images can be saved as multidimensional matrices in Matlab thanks to Matlab's powerful support of multidimensional data representation. However, within Matlab, most of image manipulation functions are limited or...
    Downloads: 0 This Week
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  • 5
    WM Hyperintensities Segmentation Toolbox

    WM Hyperintensities Segmentation Toolbox

    Open Source White Matter Hyperintensities Segmentation Toolbox

    Wisconsin White Matter Hyperintensity Segmentation [W2MHS] and Quantification Toolbox is an open source MatLab toolbox designed for detecting and quantifying White Matter Hyperintensities (WMH) in Alzheimer’s and aging related neurological disorders. WMHs arise as bright regions on T2- weighted FLAIR images. They reflect comorbid neural injury or cerebral vascular disease burden. Their precise detection is of interest in Alzheimer’s disease (AD) with regard to its prognosis. Our toolbox...
    Downloads: 0 This Week
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  • 6

    An ethernet sniffer for BrainNet36®

    An ethernet sniffer for the EEG acquisition system BrainNet36®

    ...BrainNet36® has 36 channels, A/D converters with 16 bit accuracy, conversion time of 10 µs and Ethernet communication interface. Being a device for clinical purposes, BrainNet36® does not export data online. This sniffer was developed to allow online processing by working in promiscuous mode and recording data in a plain text file.
    Downloads: 0 This Week
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  • 7

    WaveSorter

    A powerful, versatile tool for offilne spike analysis and sorting

    ...It supports a wide array of binary file formats as well as ASCII text.
    Downloads: 0 This Week
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  • 8
    HRVAS: HRV Analysis Software
    This project will be moving to GitHub. If you want to contribute or get the latest source go to: https://github.com/jramshur/HRVAS HRVAS is a heart rate variability (HRV) analysis tool developed using MATLAB. HRVAS can detrend and filter IBI and can perform time domain, frequency domain, time-frequency, Poincare', and nonlinear HRV analysis. If you use this application or modify this application for your research, please reference the thesis entitled "DESIGN, EVALUATION, AND APPLICAION...
    Downloads: 4 This Week
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  • 9
    DICOM Anonymizer replaces the patient names in all the DICOM files in a folder (and sub-folders) with other strings you assigned. Works as a batch and works fast. Supports number index. Anonymizing is required for medical image processing.
    Downloads: 14 This Week
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  • 10
    FluoroCorrect is a Matlab-based, open source software package designed for correcting image deformations introduced by X-ray image intensifiers in fluoroscopy images. All tools in this package are scriptable, allowing for batch processing.
    Downloads: 0 This Week
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  • 11
    This is a toolkit for medical natural language processing (NLP). The core engine is general enough to be used in a variety of text processing domains, though the toolkit includes specific support for medical reports and patient de-identification.
    Downloads: 0 This Week
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  • 12
    spmjob is a free batch processing toolbox for SPM 2 (Statistical Parametric Mapping). It supports preprocessing, parameter estimation, contrasts and second level analysis. spmjob has both flexible scripting support and a user friendly GUI.
    Downloads: 0 This Week
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  • 13
    The OBO-Annotator is a semantic NLP tool that is designed to give its end-users a great deal of flexibility to combine any number of OBO ontologies from the OBO foundry regardless of their format and use them to annotate text-bases.
    Downloads: 0 This Week
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