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Febrl (Freely Extensible Biomedical Record Linkage) does data standardisation (segmentation and cleaning) and probabilistic record linkage ("fuzzy" matching) of one or more files or data sources which do not share a unique record key or identifier.
Application to use MRI brain atlases composed of template images and label images pairs.
This application will segment MRI images using labels provided by the atlas. The labels are combined using the voting fusion technique.
Please visit our page at
http://www.brain-development.org.
CoactivationMap is a graphic user interface to browse through a map of functional co-activations of the human brain. Click on a region, and observe which other regions are likely to be connected
PyBact is an open source software written in Python for Bacterial Identification. The software generates simulated data matrix which accurately represents the probabilistic positive/negative results of the tested biochemical test.
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"MITO - Medical Imaging TOolkit" is an open-source, Windows-based software architecture for advanced Medical Imaging. Main characteristics are: DICOM compliant, 2D/3D/S3D visualization, image segmentation and fusion, ROI, advanced 3D user interface
On The Mark is a video and image scoring system that allows one to mark any number of events and durations through a simple, easy-to-use graphical interface.
The goal of the See&Touch project is to design/implement a special mouse for disabled people, which allows a person to fully control a computer by using just vision and one single body movement. This project develops hardware, firmware and software.
PyExPsiN is a Python crossplatform (Linux/Windows) module for made easy writing psychological experiments. Right now includes functions for DMTS (Delayed Matching to Sample), N-Back, Spatial N-Back, "Grammatical", Mixed Dots, Stroop, and more.
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PocketAnalyzerPCA combines a geometric algorithm for detecting pockets in proteins with Principal Component Analysis and clustering. This enables visualization and analysis of pocket conformational distributions of large sets of protein structures.
Census, formerly NONMEMory, is a project manager for population pharmacokinetic and pharmacodynamic analysis using the nonlinear mixed-effect modelling application NONMEM.
ptsa (pronounced pizza) stands for Python Time Series Analysis. A python module specifically designed with neural data in mind (EEG, MEG, fMRI, etc...), but applicable to almost any type of time series.
MASyV (Multi-Agent System Visualization) enables one to write agent-based models/cellular automata, eg. in C, visualize them in real time & capture to movie file with MASyVs GUI & message passing lib. Includes examples: Hello World, ants, viral infection
3D medical image platform for visualization and image processing. Segmentation with Levels sets. Surface reconstruction with marching Cubes, texture Mapping and Raycasting,DICOM support. Integration environment for VTK, ITK and vtkInria3D under wxWidgets
"""
E-Cell's source code repository has moved to GitHub!
https://github.com/ecell
The development of E-Cell now continues on GitHub.
The Subversion repository was abandoned.
"""
E-Cell System is an object-oriented software suite for modeling, simulation, and analysis of large scale complex systems such as biological cells. It allows many components driven by multiple algorithms with different timescales to coexist in a model.
Vurtigo is a 4D (3D + time) real-time visualization software for guiding cardiovascular interventions. It is primarily intended for use with a magnetic resonance imaging (MRI) scanner, and also actively tracked catheters and navigational devices.
The latest releases are not available on sourceforge; check out the vurtigo.ca link below for the most up-to-date version.
PyTuneSounds is a application that lets the user tune the volumes of sounds in a variety of ways, e.g. to use these in psychoacoustic experiments. It is possible to correct the spectrum of the sound with respect to equipment-inherent filters.
This toolkit allows complete control of a microscopy setup from Labview, Matlab, Scilab, Python, .Net, VB, IgorPro, Mathematica and more. Included is a standalone program for image acquisition and scripting control of a scientific microscope.
Naimath (syn. blessing) is a project to create tools for diagnosis, management of clinical cases in the form of Rule based Medical Expert System integrating Interactive Health education, Semantified EMR, and serve as a learning tool for students. Website seen at www.naimath.com
EHR/EMR cross-platform electronic medical record application
EHR/EMR cross-platform software for the design, implementation and use of autonomous, open, database models for multilingual medical knowledge management systems from primary care to continuing care.
qips is a software package for analyzing ChIP-seq ("Chromatin ImmunoPrecipitation on sequencing") data. It finds enriched regions of arbitrary lengths and is therefore especially suited for analyzing ChIP-seq of histone marks or polymerase.
A Java application used in whole genome analysis to display SNPs in a genomic context. Supplementary data is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks.