Search Results for "gtd-free"
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Showing 108 open source projects for "gtd-free"
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FieldTrip
The MATLAB toolbox for MEG, EEG and iEEG analysis
FieldTrip is the MATLAB software toolbox for MEG, EEG and iEEG analysis, which is released free of charge as open source software under the GNU general public license. FieldTrip is developed by members and collaborators of the Donders Institute for Brain, Cognition, and Behaviour at Radboud University, Nijmegen, the Netherlands. The toolbox offers advanced analysis methods of MEG, EEG, and invasive electrophysiological data, such as time-frequency analysis, source reconstruction using dipoles... -
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JSONLab
JSONLab: compact, portable, robust JSON/binary-JSON encoder
JSONLab is a free and open-source JSON/UBJSON/MessagePack encoder and decoder written in the native MATLAB language. It can be used to convert a MATLAB data structure (array, struct, cell, struct array, cell array, and objects) into JSON/UBJSON/MessagePack formatted strings and files, or to parse a JSON/UBJSON/MessagePack file into MATLAB data structure. JSONLab supports nearly all versions of MATLAB and GNU Octave (a free MATLAB clone). The development of JSONLab is currently funded by the US... -
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PRIMA
PRIMA is a package for solving general nonlinear optimization problems
PRIMA is a package for solving general nonlinear optimization problems without using derivatives. It provides the reference implementation for Powell's derivative-free optimization methods, i.e., COBYLA, UOBYQA, NEWUOA, BOBYQA, and LINCOA. PRIMA means Reference Implementation for Powell's methods with Modernization and Amelioration, P for Powell. PRIMA is a package for solving general nonlinear optimization problems without using derivatives. It provides the reference implementation... -
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TIGRE
TIGRE: Tomographic Iterative GPU-based Reconstruction Toolbox
TIGRE is an open-source toolbox for fast and accurate 3D tomographic reconstruction for any geometry. Its focus is on iterative algorithms for improved image quality that have all been optimized to run on GPUs (including multi-GPUs) for improved speed. It combines the higher-level abstraction of MATLAB or Python with the performance of CUDA at a lower level in order to make it both fast and easy to use. TIGRE is free to download and distribute: use it, modify it, add to it, and share it. Our... -
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Fatlab
Free open-source fatigue analysis software
Fatlab is a fatigue post processor which takes results from FE analyses and combine those with load-time series in order to perform a detailed fatigue assessment of a component. It handles both multiaxiality through the critical plane method and non-linear FE models. -
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LabPlot
Data Visualization and Analysis
LabPlot is a FREE, open source and cross-platform Data Visualization and Analysis software accessible to everyone. -
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Source code from the Research Institute for Signals, Systems and Computational Intelligence http://fich.unl.edu.ar/sinc
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RAFTS³G
Rapid Alignment Free Tool for Sequences Similarity Search to Groups
| RAFTS3G - Rapid Alignment Free Tool for Sequences Similarity Search to Groups| % Clustering algoritm to create homology clusters based on RAFTS3 (VIALLE, R. A.) % More informations about RAFTS3 in: https://sourceforge.net/projects/rafts3/ % Professional and Technical Education Sector from the Federal University of Paraná - Bioinformatic Lab. % Federal of Paraná University - UFPR % Dr. Alcides Vieira Arco-verde street, 1225 % CEP: 81520-260 Jardim das Américas % Curitiba... -
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Ultrashort Pulse Propagator
A powerful simulation for designing femtosecond lasers and amplifiers.
... effect, gain with bandwidth limitation and saturation, loss, and saturable absorption. Disclaimer: The simulation code is provided free of charge for the use of the academic community only. We kindly ask the users to acknowledge use of the code in academic settings. We do not accept responsibility for any errors or omissions that may be present. Çağrı Şenel, Punya Prasanna Paltani, Fatih Ömer Ilday -
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CyberUnits
Class library for computational cybernetics
CyberUnits is a cross-platform class library for rapid development of high-performance computer simulations in life sciences. It supports modelling for biomedical cybernetics and systems biology with Object Pascal. -
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iElectrodes
intracranial electrodes localization toolbox
iElectrodes is a free and open-source Matlab® toolbox to obtain intracranial electrode coordinates from MRI and CT images. Precise and reliable localization can be achieved fast and in a semiautomatic way with minimal user intervention. The toolbox works with ECoG (subdural grids and strips) and SEEG (depth) electrodes. The new GridFit algorithm can precisely localize high-density electrodes (up to 3mm). Brain parcellations (atlas) and surfaces can be imported to aid 2D and 3D visualization... -
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Spheroid_segmentation
Deep learning networks for spheroid segmentation
To accelerate the analysis of tumors' spheroids, different deep learning networks were trained to automatize the segmentation process. The code provides the trained networks based on Vgg16, Vgg19, ResNet18, and ResNet50 ready to be used for segmentation purposes. It also provides Matlab functions ready to be used to train new networks, segment new images, and measure the quality of the training using different quantitative parameters. -
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Blueprint XAS is a Matlab-based suite designed for the processing and analysis of near-edge x-ray absorption spectroscopy (XAS) data. The suite is designed primarily to assist users in exploring reasonable fit solutions while minimizing user bias.
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RenewNet Foundry
Building blocks for the renewable energy industry.
RenewNet Foundry is a repository for an integrated set of simulation components for system simulation of wind, wave and tidal energy systems. -
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NASA T0TEM
Calculate ASTM E1921 master curve and transition temperature.
T0 Test Evaluation Module (T0TEM) V1.5 calculates the ASTM E1921-19b master curve and T0 temperature for ferritic steels in the ductile-brittle transition region. It creates all required plots for the basic master curve and the inhomogeneity annex. Output is delivered via table or CSV and plots exported as picture files. The program is coded in MATLAB 2021a using App Designer. Use of T0TEM V1.5 is possible without a MATLAB license by utilizing the free MATLAB Runtime Version 9.10... -
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OpenDAFF
Directional Audio File Format
OpenDAFF is a free, open-source software package for directional audio data - like the directivity of microphones, speakers, as well as head-related transfer functions (HRTFs) -
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Isolation Similarity
aNNE similarity based on Isolation Kernel
Demo of using aNNE similarity for DBSCAN. Written by Xiaoyu Qin, Monash University, March 2019, version 1.0 This software is under GNU General Public License version 3.0 (GPLv3) This code is a demo of method described by the following publication: Qin, X., Ting, K.M., Zhu, Y. and Lee, V.C., 2019, July. Nearest-neighbour-induced isolation similarity and its impact on density-based clustering. In Proceedings of the AAAI Conference on Artificial Intelligence (Vol. 33, pp.... -
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An alignment-free standalone tool with interactive graphical user interface for DNA sequence comparison and analysis
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GVAR
The GVAR Toolbox 1.1 is designed for the purpose of GVAR modelling.
The GVAR Toolbox was originally launched in December 2010 with the release of version 1.0, sponsored by the European Central Bank. Version 1.1 was released in July 2011 and is available to download, free of charge, from this website. Derived from Dr. L.Vanessa Smith's project Exploring International Economic Linkages Using a Global Model, the GVAR Toolbox 1.1 is the second release of a collection of MatLab procedures with an Excel-based interface, designed for the purpose of GVAR modelling... -
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This is a standalone program for a) the calculation of diffusion coefficients of sorbates inside nanoporous materials at different loadings by using transition rate constants and for b) solving the master equation for a system consisted of a large number of unit cells per each direction. It is based on the following published paper "Kolokathis, P. D., Braun, O. M.. J. Comput. Chem. 2019, 40, 2053– 2066. DOI: 10.1002/jcc.25857"
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The DREAM Toolbox
The DREAM toolbox is a free open source acoustic field simulation tool
The DREAM (Discrete REpresentation Array Modelling) toolbox is a free open source toolbox, for both Matlab and Octave , for simulating acoustic fields radiated from common ultrasonic transducer types and arbitrarily complicated ultrasonic transducers arrays. The DREAM toolbox enables analysis of beam-steering, beam-focusing, and apodization for wideband (pulse) excitation both in near and far fields. The code in the svn repository # svn co http://svn.code.sf.net/p/dreamtoolbox/code/trunk... -
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MAT-MECAS
Cell impedance analysis software.
MAT-MECAS is used for calculation of impedance parameters of a cell from recorded current responses elicited by bipolar voltage stimuli in a whole-cell patch-clamp experiment. The calculations are based on a FFT deconvolution procedure and on approximation of the reconstructed currents with a theoretical function. The impulse response of the signal path is necessary for the calculations. Read manual first! For testing MAT-MECAS we provide a sample data along with sample stimulation protocols. -
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TX-TL modeling toolbox
Modeling and analysis tools for the TX-TL cell-free expression system
This project contains tools for using the TX-TL cell-free expression system. These tools include component models for simulating and analyzing biomolecular circuits, as well tools for composing circuits and creating more complex systems. NOTE: This project has been shifted to GitHub: https://github.com/BuildACell/txtlsim -
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MRiLab
A Numerical MRI Simulation Platform
The MRiLab project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MRiLab/ The MRiLab is a numerical MRI simulation package. It has been developed and optimized to simulate MR signal formation, k-space acquisition and MR image reconstruction. MRiLab provides several dedicated toolboxes to analyze RF pulse, design MR sequence, configure multiple transmitting and receiving coils, investigate magnetic field related properties and evaluate real-time... -
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F-Tracker3D
A software tool for tracking fluorescent cells in 3D
F-Tracker3D is acronym of "fluorescent cell tracker in three-dimensions". It is a software tool designed to track fluorescent cells using time-lapse z-stacks of images acquired with a confocal or light-sheet microscope. First, each single cell is tracked in 2D by using the maximum intensity projections of the z-stacks and CellTracker, the free open source software available at: www.celltracker.website. Then, the 3D track of each cell is obtained analysing the z-stacks and looking for the z...