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This executable is supplementary material as part of the manuscript submission BIO-14-1289.

RIPE (Regulatory network Inference from joint Perturbation and Expression data) is a novel three-step method that integrates both perturbation data and steady state gene expression data in order to estimate a regulatory network. The ripe package is written in R, with additional functionality provided by a MATLAB executable file. The executable file uses a runtime engine called the MATLAB Compiler Runtime (MCR). The executable for different architectures is distributed on this site together with the R package itself.

...Band analysis can be made using fast FFT methods or slower, but ANSI standard methods. Source code requires MATLAB + Signal Processing Toolbox. Developed under MATLAB R2010a (but might work with some earlier versions) Executable version does not require MATLAB and runs under Windows XP, Vista, and Windows 7.