Search Results for "engineering web"
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Showing 12 open source projects for "engineering web"
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Systems Biology Markup Language (SBML)
A file format for exchanging computational models in systems biology
The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology. Visit the project web site to learn more. -
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Lenia
Lenia - Mathematical Life Forms
Lenia is a 2D cellular automaton with continuous space, time, and states. It produces a huge variety of interesting life forms. There are various versions available. Python, Matlab, and web (JavaScript) versions are real-time, interactive, and equipped with statistics tools. Jupyter and R versions are non-interactive and just for demonstration purposes. -
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SILA
Automated bacterial and archaeal genome annotation system
SILA is a system for automated annotation of bacterial and archaeal genomes. It provides accurate gene prediction using a combination of tools (Prodigal and HGF) and a web site for task management and visualization of annotation. This project is in alpha stage. Please use the online service available at: http://www.bioinfo.ufpr.br/SILA/login.jsp Documentation (portuguese only): http://hdl.handle.net/1884/34801 -
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LRPR
Low Rank Page Rank: A matlab project in sparse matrix computation
The problem of Pagerank is a simple one to state: Given a collection of websites, how do we rank them? The primary way of formulating this utilizes a transition matrix which relates how web pages interact with each other. We investigate what the effect of a low rank approximation for the transition matrix has on the power method and an inner-outer iteration for solving the Pagerank problem. The purpose of the low rank approximation is two fold: (1) to reduce memory requirements (2) to... -
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Ymap - Yeast Mapping Analysis Pipeline
Pipeline for large-scale genome changes analysis of genome datasets.
The active use repository has migrated over to: https://github.com/darrenabbey/ymap The repository here was errantly created with some large binary files included. Attempts to extract the files from the history here have failed. A copy of the history was successfully scrubbed and then hosted at github. -------- Eukaryotic pathogens have complicated and dynamic genomes. To facilitate analysis of copy number variations (CNV), single nucleotide polymorphisms (SNPs), and loss of... -
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Fish4Knowledge Project
Analysis of undersea fish videos
The Fish4knowledge project investigated: information abstraction and storage methods for analyzing undersea video data (from 10E+15 pixels to 10E+12 units of information), machine and human vocabularies for detecting & describing fish, flexible process architectures to process the data and scientific queries and effective specialised user query interfaces. A combination of computer vision, database storage, workflow and human computer interaction methods were used to achieve this. The... -
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OpenPMU is a collaborative project developing a software defined Phasor Measurement Unit for Smart Grids and electrical utilities. This project is currently hosted by Queen’s University Belfast.
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Web Interface to Octave allows to run GNU Octave commands from a web browser. Application is written in PHP and needs SQL database. It supports user profiles, user-created functions, scripts.
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A particle swarm optimization demo written by students in the digital communication msc program (2010) at uni-kiel.
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JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.
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Design and develop Recommendation and Adaptive Prediction Engines to address eCommerce opportunities. Build a portfolio of engines by creating and porting algorithms from multiple disciplines to a usable form. Try to solve NetFlix and other challenges.
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An open source,platform independent,technical web programming language using MATLAB in background, that supports 3-Tier Architecture (Web-Business-DB) including Distributed Computing and Parallel Processing via remote procedure calls and web services.
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