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The GetData library provides an API to interface with Dirfile databases. The Dirfile database format is designed to provide a fast, simple, scalable format for storing and reading binary, synchronously-sampled, time-ordered data.
LC-MS/MS data browser designed for siderophore analysis
MS2Browser is a tool for interactive pre-processing, analysis and visualization of LC-MS/MS data. Input is an mzXML file with centroided LC-MS/MS data. The program is written in MatLab and it was designed for the analysis of siderophores (iron transporting small molecules) in bacterial media. Some of the functionality and use of MS2Browser is described as part as an open-access book chapter:
http://www.intechopen.com/books/applications-from-engineering-with-matlab-concepts/small-molecule-lc-ms-ms-fragmentation-data-analysis-and-application-to-siderophore-identification
A siderophore structural database assembled for this project can be found alongside the MS2Browser software (.cfw format to be used with ChemBioFinder(TM) ).
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compariSong is an audio tool to support query by singing/humming. It compares a database of popular songs with a hummed-by-user melody and returns the closest matches.
MATLAB Audio Database Toolbox enables easy access and filtering of audio databases such as TIMIT and YOHO by their metadata. The database toolbox comes to replace the manual filtering and custom coding usually required for accessing such databases.
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This tool allows to compute LOLIMOT models. LOLIMOT models are also called neuro-fuzzy models or fast neural network models. This tool can export the model into C, C++, Matlab.
A tool based on the model proposed by Bellman & Zadeh (1970) fuzzy logic (fuzzy sets) decision support paper. The first version of the application was developed in Java (pure java + jgoodies and some other APIs).
Now it is being rewritten using nebular, a pure Java fuzzy API.
Extended Bioaccumulation Framework (ExBAF) is a tool for assessing bioaccumulation in foodwebs. Supports several bioaccumulation models and provides tools for analysis and visualization.