Showing 38 open source projects for "data base tools"

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  • 1
    Peroxide

    Peroxide

    Rust numeric library with high performance and friendly syntax

    Rust numeric library contains linear algebra, numerical analysis, statistics and machine learning tools with R, MATLAB, Python-like macros. Peroxide uses a 1D data structure to represent matrices, making it straightforward to integrate with BLAS (Basic Linear Algebra Subprograms). This means that Peroxide can guarantee excellent performance for linear algebraic computations by leveraging the optimized routines provided by BLAS. For users familiar with numerical computing libraries like NumPy...
    Downloads: 1 This Week
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  • 2
    hctsa

    hctsa

    Highly comparative time-series analysis

    hctsa is a Matlab software package for running highly comparative time-series analysis. It extracts thousands of time-series features from a collection of univariate time series and includes a range of tools for visualizing and analyzing the resulting time-series feature matrix.
    Downloads: 0 This Week
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  • 3
    Biosignal Tools
    BioSig is a software library for processing of biomedical signals (EEG, ECG, etc.) with Matlab, Octave, C/C++ and Python. About 50 different data formats are supported.
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    Downloads: 262 This Week
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  • 4
    AtomProbeLab

    AtomProbeLab

    Matlab-based analysis of Atom Probe Data

    A collection of scripts and functions for the analysis of atom probe tomography data. Currently, this includes: standard file operations, plotting mass spectra, mass spectra analysis and mass peak overlap solving. For more information see the Wiki: https://sourceforge.net/p/atomprobelab/wiki/Home/ Quick overview video: https://youtu.be/8rJHce7M5UU More in-depth video using the APT school demos live script: https://www.youtube.com/watch?v=cyrLHCzZwuw For details of the maximum likelihood...
    Downloads: 4 This Week
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  • 5
    The Sound Description Interchange Format (SDIF) is an established standard for the interchange of sound descriptions and analysis data. This project provides libraries, SDIF (in C) and Easdif (in C++), tools, and wrappers to read and write SDIF files.
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    Downloads: 2 This Week
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  • 6
    OpenDAFF

    OpenDAFF

    Directional Audio File Format

    OpenDAFF is a free, open-source software package for directional audio data - like the directivity of microphones, speakers, as well as head-related transfer functions (HRTFs)
    Downloads: 1 This Week
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  • 7
    ReViMS

    ReViMS

    ReViMS, a 3D volume rendering tool for light-sheet/confocal microscopy

    Reconstruction and Visualization from Multiple Sections (ReViMS), an open-source, user-friendly software for automatically estimating volume and several other features of 3D multicellular aggregates (i.e., cancer spheroid, zebrafish, fruit fly). ReViMS requires a z-stack of 2D binary masks, obtained by segmenting a sequence of fluorescent images acquired by scanning the aggregate along the z axis, using a confocal or a light-sheet fluorescent microscope. It provides a number of tools...
    Downloads: 0 This Week
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  • 8
    mctc4bmi

    mctc4bmi

    Matrix and Tensor Completion for Background Model Initialization

    MCTC4BMI (Multimodal Compressed Sensing and Tensor Decomposition for Brain-Machine Interfaces) is a MATLAB toolbox designed to process and analyze EEG data. It applies compressed sensing and tensor decomposition techniques to improve brain-machine interface (BMI) performance.
    Downloads: 0 This Week
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  • 9
    SANGOMA
    Development of new data assimilation techniques for ocean models
    Downloads: 3 This Week
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  • 10

    MetaOpen

    Metabolomics Bioinformatics Tools

    ...-mass spectrometry (LC-MS), and comprehensive two-dimensional gas chromatography-mass spectrometry (GCxGC/TOF-MS). Each type of analysis affords limited analyte coverage of molecules present in a patient sample and therefore provides only a partial molecular profile for an individual patient. These diverse analytical data must be integrated with advanced bioinformatics methods for accurate evaluation of health and detection of disease susceptibility.
    Downloads: 0 This Week
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  • 11
    SPIW - Scanning Probe Image Wizard

    SPIW - Scanning Probe Image Wizard

    Scanning Probe Image Wizard - MATLAB Toolbox

    SPIW is a MATLAB toolbox, for automated processing of scanning probe microscope images. Tools are applicable to all SPM images, but the main focus is on images with atomic or molecular resolution. SPIW is primarily a MATLAB toolbox with functions designed to be called in a user's own script. SPIW also has a very basic GUI for browsing and exporting images. For information on SPIW's performance see our publication ( http://dx.doi.org/10.1063/1.4827076 ) in the Review of Scientific...
    Downloads: 0 This Week
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  • 12
    Qi - Quantitative Imaging (PIV and more)

    Qi - Quantitative Imaging (PIV and more)

    A collection of MATLAB tools for PIV, PTV, particle sizing, and more.

    Qi is a collection of MATLAB tools for the quantitative analysis of flow field images. Our Particle Image Velocimetry (PIV) tool, prana, implements a Robust Phase Correlation kernel for PIV analysis, and now includes Particle Tracking Velocimetry and sizing tools. Tools for pressure calculation, proper orthogonal decomposition (POD), and 3d imaging are under development.
    Downloads: 0 This Week
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  • 13
    Toolboxes for SPM (http://www.fil.ion.ucl.ac.uk/spm/) developed at Freiburg Brain Imaging (http://fbi.uniklinik-freiburg.de/)
    Downloads: 3 This Week
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  • 14

    nail_systems_biology

    NAIL is a toolset for network analysis in the life sciences

    The NAIL (Network Analysis and Inference Library) project is a set of tools for solving problems in the life sciences using network (graph) approaches. NAIL includes methods for creating networks, analysing and comparing networks, and for visualising or presenting the results. These methods are designed as self-contained platform-independent components which can be called either from another program, or from a command line. Modelling biological systems as networks (graphs) is becoming...
    Downloads: 0 This Week
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  • 15
    NaRIBaS

    NaRIBaS

    Unix-based preparation and analysis toolbox for molecular simulations

    Unix-based preparation and analysis toolbox for Nanomaterials and Room Temperature Ionic Liquids in Bulk and Slab using bash scripts, Gromacs tools and Matlab functions. NaRIBaS provides a framework that decouples user input parameter and terminal based command lines. NaRIBaS does not replace a simulation software and specific analysis tools like Gromacs, but it allows iterative repetition of tasks while changing specific input parameter. The toolbox is to be understood as a scripting...
    Downloads: 0 This Week
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  • 16
    Matlab tool for plotting multi-channel biomedical signals. It is designed for researchers on both engineering and medicine who have to collaborate to visualize and analyze signals. It is the ideal tool to plot electroencephalogram (EEG), Foetal Heart Rate (FHR) and many other signals with the standard tools used in clinical routine.
    Downloads: 0 This Week
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  • 17
    A set of tools for tactile display of Matlab graphs using haptic (force feedback) devices.
    Downloads: 0 This Week
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  • 18

    MetCore

    Metabolomics Bioinformatics Tools

    ...-mass spectrometry (LC-MS), and comprehensive two-dimensional gas chromatography-mass spectrometry (GCxGC/TOF-MS). Each type of analysis affords limited analyte coverage of molecules present in a patient sample and therefore provides only a partial molecular profile for an individual patient. These diverse analytical data must be integrated with advanced bioinformatics methods for accurate evaluation of health and detection of disease susceptibility.
    Downloads: 0 This Week
    Last Update:
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  • 19
    Tools for mass spectrometry, especially for protein mass spectrometry and proteomics: Quantification tools, converters for Applied Biosystems (Q Star and Q Trap), calculation of in-silico fragmentation spectra, converter for Mascot result files
    Downloads: 0 This Week
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  • 20
    A MATLAB package for wavelet analysis of circadian rhythms with both discrete (Daubechies) and continuous (Morlet) wavelets, as well as tools for batch processing of multiple time series, all accessible through a graphical user interface.
    Downloads: 0 This Week
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  • 21
    This is a c-library that provides tools for advanced analysis of electrophysiological data. It features denoising, unsupervised classification, time-frequency analysis, phase-space analysis, neural networks, time-warping and more.
    Downloads: 0 This Week
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  • 22
    gfit creates an interface between computational models and experimental data and provides tools for their analysis
    Downloads: 0 This Week
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  • 23
    MicrobeTracker
    A MATLAB-based software package for microbiological research designed to detect and outline bacterial cells in microscopy images and to analyze fluorescence signal inside them.
    Downloads: 0 This Week
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  • 24
    This is a MATLAB toolbox for the quality control and scoring of EMAP and SGA genetic interaction data. It includes a graphical user interface and some automatic plot-generating tools.
    Downloads: 0 This Week
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  • 25
    SHMTools is set of compatible software tools (mostly Matlab based) for structural health monitoring (SHM) research. This includes algorithms for system design, modeling, data acquisition, feature extraction, classification, and prognosis.
    Downloads: 0 This Week
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