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Showing 17 open source projects for "applied"
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PROPER Optical Propagation Library
Routines for wavefront propagation in IDL, Matlab, and Python
PROPER is a library of routines for the propagation of wavefronts through an optical system using Fourier-based methods. It was developed at the Jet Propulsion Laboratory for modeling stellar coronagraphs, but it can be applied to other optical systems were diffraction propagation is of concern. It is currently available for IDL (Interactive Data Language), Matlab and Python (3.x). It includes routines for generating complex apertures and obscurations and aberrations (Zernike & PSD-defined... -
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Ultrashort Pulse Propagator
A powerful simulation for designing femtosecond lasers and amplifiers.
This is a simulation package developed for numerical simulation of ultrashort pulse propagation in optical media and pulse generation from mode-locked lasers. Although the code is primarily intended for investigations of fiber links, fiber amplifiers and fiber lasers, it can be applied to any other setting for which the governing equiations are valid. The physics included in the code is based on a generalized nonlinear Schrödinger equation, including higher order dispersion, stimulated Raman... -
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chethermo
Software for Introductory Chemical Engineering Thermodynamics
Introductory Chemical Engineering Thermodynamics helps readers master the fundamentals of applied thermodynamics as practice today. The text is distinctive in making the molecular perspectives accessible at the introductory level and connecting properties with practical applications. This site distributes the software for the textbook. If you are a 'user', then you want to download the archive from 'Download' icon or the 'Files' link. If you want the latest version of a particular file... -
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PRMLT
Matlab code of machine learning algorithms in book PRML
... (for reading image data). The code is extremely compact. Minimizing code length is a major goal. As a result, the core of the algorithms can be easily spotted. Many tricks for speeding up Matlab code are applied (e.g. vectorization, matrix factorization, etc.). Usually, functions in this package are orders faster than Matlab builtin ones (e.g. kmeans). Many tricks for numerical stability are applied, such as computing probability in logrithm domain, square root matrix update to enforce matrix symmetry. -
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Sensitizer
A toolset to automate STOP analysis with Zemax OpticStudio
.... The core data structure of SENSITIZER is an optical group, which can be any optical surface in the lens file or a set of subsequent surfaces. These groups will be perturbed by varying their positions relative to the rest of the system (rigid-body-motions) and/or by adding Zernike shape deformations on their front surface. After a certain perturbation is applied, ZOS runs (sequential) raytracing to compute the optical performance such as centroid displacement or wavefront error. -
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Invariant curve calculations in Matlab
Calculating stable & unstable curves for 2 dimensional maps in matlab.
This is an implementation that follows closely the algorithm for calculating stable curves, described by J. P. England, B. Krauskopf, H. M. Osinga in the paper "Computing One-Dimensional Stable Manifolds and Stable Sets of Planar Maps without the Inverse" published in SIAM J. APPLIED DYNAMICAL SYSTEMS 3.2 (2004), 161-190. The package also contains an implementation for calculating the unstable curves which is based on the paper "Growing 1D and Quasi-2D Unstable Manifolds of Maps" by Bernd... -
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MRiLab
A Numerical MRI Simulation Platform
... technique. The main MRiLab simulation platform combined with those toolboxes can be applied to customize various virtual MR experiments which can serve as a prior stage for prototyping and testing new MR technique and application. If you find MRiLab useful for your work, please cite this paper: Fast Realistic MRI Simulations Based on Generalized Multi-Pool Exchange Tissue Model. IEEE Transactions on Medical Imaging. 2016. doi: 10.1109/TMI.2016.2620961 -
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Matrix factorization is applied to the B-spline basis to construct an orthonormal basis. Data can be approximated by a linear combination of the orthonormal basis functions. Constraints are imposed such that the fitted function is linear at the boundary points, as in natural cubic spline.
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Density-ratio based clustering
Discovering clusters with varying densities
This site provides the source code of two approaches for density-ratio based clustering, used for discovering clusters with varying densities. One approach is to modify a density-based clustering algorithm to do density-ratio based clustering by using its density estimator to compute density-ratio. The other approach involves rescaling the given dataset only. An existing density-based clustering algorithm, which is applied to the rescaled dataset, can find all clusters with varying densities... -
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CT collimation measurements using CR plates. Please reference Bjarnason TA, Yang CY. CT radiation profile width measurement using CR raw data. Journal of Applied Clinical Medical Physics. 2015;16:501-507. Available from: http://www.jacmp.org/index.php/jacmp/article/view/5512
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Matlab Affine Registration
Matlab GUI for 2D Affine Image Registration
Matlab Affine Registration (MAR) is a landmark based registration GUI, developed for 2D registration. The user first loads a reference image and a floating image. The user then selects the number of fiducial markers (or landmarks) and places them on the floating and reference images. A "Find Centroid" button is included, which will locate all centroids in the image. After selecting the markers on both images, the user clicks "Register". The floating image has a transformation applied which... -
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Tools for mass spectrometry, especially for protein mass spectrometry and proteomics: Quantification tools, converters for Applied Biosystems (Q Star and Q Trap), calculation of in-silico fragmentation spectra, converter for Mascot result files
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SmartWeld
Weld Optimization for Automatic Welding
Science based weld software to develop optimal automatic weld procedures. SmartWeld is a PC based tool for designers, engineers, and technicians to aid in selecting, optimizing, and configuring automated welding processes. -
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<Temporarily Unavailable Online> This project is aiming at completing a library of open codes (mainly based on MATLAB at present) to deal with Dipoles-Cavity Interaction problems. Common methods, including Green's function method and Master Equation method et al, will be applied to the coding. Samples of calculations and standard comparison with publications using the library will be given for demonstration of the usage. Interface to some commonly used software, such as Lumerical FDTD Solutions...
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Coho is a reachability analysis platform for high-dimensional, nonlinear hybrid systems, especially for analog circuit verification.This tools has been applied to verify many circuits, including toggle, arbiter, flipflop, celement, oscillator, etc.
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Provides pre-compiled MEX functions that wrap around the libsvm C library. Many enhancement are applied to the C version of the library to speed up Matlab usage. 64-bit only.
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Open Source code for machine learning applied to anthropological/art objects. initially a collaboration between C. Wiggins+I. Tamaru (Columbia) and A. Gansell (Harvard) to identify true regions for lost/misplaced objects recovered in mesopotamia (Iraq).
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