Search Results for "3d data visual"
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Showing 29 open source projects for "3d data visual"
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Red Hat Enterprise Linux (RHEL) on Microsoft Azure provides a secure, reliable, and flexible foundation for your cloud infrastructure. Red Hat Enterprise Linux on Microsoft Azure is ideal for enterprises seeking to enhance their cloud environment with seamless integration, consistent performance, and comprehensive support.
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It protects your internal resources such as behind-the-firewall applications, teams, and devices.
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Artifact GeoMorph Toolbox 3D 3.1
A toolbox for 3DGM shape analysis of archaeological artifacts
The Artifact Geomorph Toolbox 3D software is designed to provide the archaeologist interested in artifact shape variability with a toolbox to allow the acquisition, analysis and results exploration of homologous 3D landmark-based geometric morphometric data. As such, the toolbox contains an automated item and semi-landmarks positioning procedure and the fundamental statistical analyses and procedures to allow the processing and analysis of the data. It is designed to be easy to use... -
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ExpSuite is a software framework for applications to perform psychoacoustical experiments. ExpSuite allows acoustic and electric stimulation for normal hearing and cochlear implant listeners, respectively.
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Optimizer_sovkov
Constructing and optimizing general mathematical and physical models
We present the package Optimizer, aimed at constructing and optimizing general mathematical models of phenomena of versatile nature. It is written in the Matlab algorithmic language and is executed in the Matlab environment with partial functionality in Octave. The convenient visual interface and the detailed manuals are provided. The main benefit of the package is its capability to construct models of any level of complexity in a block-by-block manner. Elementary model blocks can be collected... -
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ReViSP
ReViSP, a 3D volume rendering MATLAB tool for multicellular spheroids
Reconstruction and Visualization from a Single Projection (ReViSP) tool: a 3D volume rendering method we developed to reconstruct the 3D shape of multicellular spheroids, besides estimating the volume by counting the voxels (3D pixels) fully included in the 3D surface. ReViSP is written in MATLAB (The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided. Requirements for running ReViSP from the source code: MATLAB 2020a and Image Processing Toolbox 11.1 or later... -
Our robust pre-built connectors and our no-code, drag-and-drop interface makes it easy and fast to automatically sync vendors, invoices, and invoice payment data between Tipalti and your ERP or accounting software.
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PsyExTool
psychophysical experiment control, data collection and visualization
PsyExTool is a Psychophysical Experiment Toolbox in Matlab/Octave dedicated to control experiment, collect and visualize data. PsyExTool is aimed to create a tool that enables to couple the methods with visual or audio stimulus presentation modules. At present the program allows to use adjustment, constant stimulus and adaptive PSI psychophysical methods. The parameters of the stimulus and psychophysical method is adjusted in a single graphical user interface. The responses are collected... -
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easy-dhpsf
GUI for fitting 3D single-molecule images using the double-helix PSF
This package of MATLAB routines with accompanying GUI allows scientific users to measure the 3D location of single molecules when using the double-helix point spread function (DH-PSF) widefield microscope. Version 2 also includes code that facilitates combining localization data from two spectral channels using a locally-weighted quadratic 3D registration function Features - Double-Gaussian estimator is calibrated via an axial scan of bright immobile fluorescent emitters (e.g. beads) - DH... -
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ReViMS
ReViMS, a 3D volume rendering tool for light-sheet/confocal microscopy
Reconstruction and Visualization from Multiple Sections (ReViMS), an open-source, user-friendly software for automatically estimating volume and several other features of 3D multicellular aggregates (i.e., cancer spheroid, zebrafish, fruit fly). ReViMS requires a z-stack of 2D binary masks, obtained by segmenting a sequence of fluorescent images acquired by scanning the aggregate along the z axis, using a confocal or a light-sheet fluorescent microscope. It provides a number of tools... -
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lottie vectors
Create, display and process 2D vectors in a 3D window.
Lottie Vectors is an application for Matlab that alows you to do some pretty neat things -with vectors. More exactly -displaying them in ways that hopefully will allow you to explore and better understand your vector data. The basic idea is simple, take a vector defined in one of a few different types of data formats and map it on the screen. Add another vector and you start to form a 'route'. Each route or position vector can be accompanied with a 'force' vector. This can be used to show... -
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UmUTracker
A MATLAB program for 2D particle tracking or 3D DHM based tracking.
... fix & Blob detection functions. Please visit our homepage for more information: http://www.physics.umu.se/english/research/biological-physics/the-biophysics-and-biophotonics-group/ *Please cite our work using the following information: Zhang, H., T. Stangner, K. Wiklund, A. Rodriguez, and M. Andersson. 2017. UmUTracker: A versatile MATLAB program for automated particle tracking of 2D light microscopy or 3D digital holography data. Comput. Phys. Commun. 219: 390–399. -
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matlab2tikz
Converts MATLAB®/Octave figures to TikZ/pgfplots figures
matlab2tikz is a MATLAB(R) script to convert native MATLAB(R) figures to TikZ/Pgfplots figures that integrate seamlessly in LaTeX documents. matlab2tikz supports the conversion of most MATLAB figures, including 2D and 3D plots. For plots constructed with third-party packages, your mileage may vary. Sometimes, MATLAB makes it hard to create matching LaTeX plots by keeping invisible objects around or stretching the plots too far beyond the bounding box. -
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CoRoPa stands for Computational Rough Paths. The aim of CoRoPa is to provide a software framework for various ideas related to Rough Path Theory, including rough differential equations and the digital description of serial data streams.
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Orbit Wizard
Educational open source tool for the design of geocentric orbits
Orbit Wizard is an educational open source tool developed in Matlab GUIDE for the design and visualization of geocentric orbits. The current version is in an early phase of development. Please employ the Orbit Wizard forum to report bugs and suggestions. The developers of Orbit Wizard are Álvaro Romero Calvo and Fernando Soler Lanagrán. Orbit Wizard is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License v2.0 External... -
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Qi - Quantitative Imaging (PIV and more)
A collection of MATLAB tools for PIV, PTV, particle sizing, and more.
Qi is a collection of MATLAB tools for the quantitative analysis of flow field images. Our Particle Image Velocimetry (PIV) tool, prana, implements a Robust Phase Correlation kernel for PIV analysis, and now includes Particle Tracking Velocimetry and sizing tools. Tools for pressure calculation, proper orthogonal decomposition (POD), and 3d imaging are under development. -
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math lib for .NET. n-dim arrays, complex numbers, linear algebra, FFT, sorting, cells- and logical arrays as well as 3D plotting classes help developing algorithms on every platform supporting .NET. Sources from SVN, binaries: http://ilnumerics.net
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Flexible Brain Graph Visualizer
Matlab code to visualise brain graphs from connectivity matrices
This very configurable script allows you to plot a 3D (MNI space) visualisation of a brain graph, with edges represented by cylinders and vertices represented by spheres. To aid orientation, a cortical mesh can be added, as can convex hull outlines. The colouring and sizing scheme is fully configurable for both edges and vertices. You can see some example output in <http://www.ncbi.nlm.nih.gov/pubmed/22677149> <http://www.ncbi.nlm.nih.gov/pubmed/20541019> <http -
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matGeom
Library for 2D/3D geometry in Matlab.
Geometry library for Matlab in 2D and 3D. Contains function for creation and manipulation of basic shapes, computing intersections, transformation, display... The project is being moved to GitHub: http://github.com/dlegland/matGeom -
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MatrixUser
A Multi-functional GUI-based Program for Image Processing and Analysis
The MatrixUser project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MatrixUser/ Most of the medical images (e.g. CT, MRI, PET, etc.) comprises multiple frames which represent slices, phases, timing etc. from the same imaging object. Those images can be saved as multidimensional matrices in Matlab thanks to Matlab's powerful support of multidimensional data representation. However, within Matlab, most of image manipulation functions are limited... -
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Open Source Implementations for 3D-Surface Characterisation Algorithms according to ISO 25178 (Geometric Product Specification) in verifiable pseudocode (MATLAB). Implementation of an XML-based file exchange format according to upcoming ISO 25178-72.
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Software for automated acquisition and analysis of paleomagnetic and rock magnetic data using the RAPID System.
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A Matlab based project for tracking cell nuclei in 3D space over time from live imaging data. (Sample images and lineage data are available under "Files".)
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SpikeAnalyzer
SpikeAnalyzer is a program for calcium spikes analysis
... an automatic fitting procedure with visual control over the process and the quality of the fit, including statistical measures. SpikeAnalyzer is equipped with an original pixel time correction algorithm, introduced to account for the exact time of acquisition of individual pixels of the object in the image. SpikeAnalyzer was tested to analyze both synthetic and raw confocal data. -
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Malimpa stands for MAtlab Library for IMage Processing and Analysis. It provides functions for 2D/3D grascale/color image creation, filtering, or measurement. It requires, and complements Matlab Image Processing Toolbox. Important notice: the project is now hosted in GitHub, https://github.com/dlegland/matImage
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This is the prototype version of software for robust detecting and segmentation of cell nuclei in 3D fluorescence labeled microscopy images. First release coming soon...
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flNeuronTool
A Fast Light Neuron Tracing and Editor Tool
The flNeuronTool allows users to reconstruct and proofread neuronal morphologies in light microscopy images. The system incorporates automatic tracing and manual editing of neuron reconstruction into a cooperative 3D interactive visualization-assisted environment, which is a powerful tool for analysis of complex neuronal images. -
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Tools for mass spectrometry, especially for protein mass spectrometry and proteomics: Quantification tools, converters for Applied Biosystems (Q Star and Q Trap), calculation of in-silico fragmentation spectra, converter for Mascot result files