Search Results for "mx-linux" - Page 6
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Showing 622 open source projects for "mx-linux"
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TX-TL modeling toolbox
Modeling and analysis tools for the TX-TL cell-free expression system
This project contains tools for using the TX-TL cell-free expression system. These tools include component models for simulating and analyzing biomolecular circuits, as well tools for composing circuits and creating more complex systems. NOTE: This project has been shifted to GitHub: https://github.com/BuildACell/txtlsim -
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Tensiomet
A MATLAB compatible library for surface stress measurements
Tensiomet is a library of MATLAB functions and procedures that helps to conduct pendant drop measurements and to post process acquired data. Its focus is elastomery, to recover material parameters of elastic interfacial layers. -
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diauxic growth model ensemble
An ensemble of models showing diauxic growth behavior
An ensemble of mathematical model is presented that all show diauxic growth behaviour of a bacterial culture. Carbon catabolite repression (CCR) is the main mechanism controlling carbohydrate uptake in bacteria, and therefore also controlling whether or not different carbon sources are metabolized in parallel or sequentially. Although described as a paradigm of the regulation of bacterial metabolism, the underlying mechanisms remain controversial. The models in the ensemble can... -
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GTK+ IOStream
GTK+iostream, Data plots, ORB, Neural Networks, WSOLA
Create GTK+ interfaces using IOStream style code. Its simple and quick! Also providing simple data plotting (similar to Matlab/Octave), ORB (Object Request Broker), and Neural Network computations. You can create GTK+ GUIs in a few lines of code. Labels<<"Thanks for reading"; (HBox<<Labels).show(); or even one line : (HBox() << (Labels()<<"Thanks for reading")).show(); Inline code destructs the classes, but leaves the widgets/callbacks operating. This is great for embedded... -
Innago is a free and easy-to-use property management solution. Whether you have 1 unit or 1000, student housing, or commercial properties, Innago is built for you. Our software is designed to save you time and money, so you can spend more time doing the things that matter most.
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mp3respectr
Weakening effect on the MP3 audio encoder
Weakening effect on the MP3 audio encoder and the assimilation of the spectral characteristics of the source. Produced by applying empirical filter (derived from an analysis of a pair of flac-mp3) to the sound in the space R2. 1) Transfer the sound of the space R to R2 (mp3rsrr2); 2) Finding the empirical filter by OLS pair flac-mp3 (mp3rsols); 3) Apply a filter to the sound (mp3rsvalue); 4) Transfer the sound of the space R2 in space R (mp3rsr2r); -
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matlab2tikz
Converts MATLAB®/Octave figures to TikZ/pgfplots figures
matlab2tikz is a MATLAB(R) script to convert native MATLAB(R) figures to TikZ/Pgfplots figures that integrate seamlessly in LaTeX documents. matlab2tikz supports the conversion of most MATLAB figures, including 2D and 3D plots. For plots constructed with third-party packages, your mileage may vary. Sometimes, MATLAB makes it hard to create matching LaTeX plots by keeping invisible objects around or stretching the plots too far beyond the bounding box. -
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Hole-drilling Eccentricity
Eccentricity correction for the hole drilling strain gauge method
The hole drilling strain gauge method is one of the most utilised techniques to determine residual stresses. The presence of eccentricity between the centre of the hole and its theoretical position can compromise the accuracy of the method. The present work proposes a method to correct the measured strains in eccentric holes in the case of non-uniform residual stresses. The depths where the strains are measured in the ASTM E837-13 are taken as reference and specific functions are proposed to... -
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CoRoPa stands for Computational Rough Paths. The aim of CoRoPa is to provide a software framework for various ideas related to Rough Path Theory, including rough differential equations and the digital description of serial data streams.
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Heat transfer in a bar and sphere
Heat transfer in a bar and sphere using finite differences.
Simulation of the heat transfer in a bar and a sphere (1D) using finite differences in Matlab. Authors: -Jheyson A. Mogollon R. - jheyson260@gmail.com -Luca Meinardo - lucameinardo@gmail.com -Angie Xiomara González - angiegduque@gmail.com Current Version: 2.0 Date: 30/05/2017 -
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This package includes a collection of MATLAB files which are designed to: 1. Given a calibration scan of the image of a point emitter with an engineered point spread function (PSF), 2. Perform a phase retrieval algorithm based on maximum likelihood estimation (MLE) of a phase aberration term which is added to the theoretical pupil function of the imaging system. 3. Use the phase-retrieved pupil function to perform single-emitter localization. Accompanying publication available here:...
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VeriSiMPL
Verification via biSimulations of Max-Plus-Linear models
This toolbox is used to generate finite abstractions of autonomous Max-Plus-Linear (MPL) systems over R^n. Abstractions are characterized as finite-state Labeled Transition Systems (LTS). The LTS finite abstractions are shown to either simulate or to bisimulate the original MPL system. LTS models are to be verified against given specifications expressed as formulae in Linear Temporal Logic (LTL) and Computation Tree Logic (CTL). The toolbox intends to leverage the NuSMV model checker. Models... -
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SimilarityViewer
Identify co-occuring genes in cyanobacteria
The SimilarityViewer allows the identification of genes co-occurring in subsets of 77 cyanobacterial organisms. The software is available as a MATLAB script and as stand-alone applications for Mac, Linux, and Windows computers. To install this program download the zip file appropriate for your system, unzip it, and follow the instructions in the README file. SimilarityViewer and the included data are licensed under the Apache License Version 2.0. If you use the SimilarityViewer... -
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detectMITE
Detection of Miniature Inverted Repeat Transposable Elements
detectMITE - a MATLAB-based tool for detecting miniature inverted repeat transposable elements (MITEs) in genomes. [1] Who are we? Please visit website: http://bioinfolab.miamioh.edu [2] How to cite detectMITE? Ye C, Ji G, Liang C (2016) detectMITE: A novel approach to detect miniature inverted repeat transposable elements in genomes. Sci. Rep. 6, 19688. http://www.nature.com/articles/srep19688 Ye C, Ji G, Li L, Liang C (2014) detectIR: A Novel Program for Detecting Perfect... -
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Ocean Optics Sample Pack
Sample code for Ocean Optics OmniDriver spectrometer device driver
Sample code demonstrating how to use OmniDriver to drive Ocean Optics full range of spectrometers from C, C++, C#, Java, LabVIEW, Delphi, MATLAB and more. -
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All future developments will be implemented in the new MATLAB toolbox SciXMiner, please visit https://sourceforge.net/projects/scixminer/ to download the newest version. The former Matlab toolbox Gait-CAD was designed for the visualization and analysis of time series and features with a special focus to data mining problems including classification, regression, and clustering.
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A Matlab software routine to perform Principal Component Analysis using Covariance, Correlation or Comedian as the criterion. Though, initially developed for experiments related to fretting wear but can be effectively used to interpret experimental data from any field. The attached files contain source code as well as a sample MATLAB (.mat) data file of 13 variables. It could be replaced to the data file of your choice. The code is open source but you are requested to give credits if used....
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AKtoolbox
Matlab Toolbox for coevolution analysis of multiple sequence alignment
AK Toolbox is a Matlab Toolbox for co-evolution analysis for protein Multiple Sequence Alignment (MSA) distributed under Simplified BSD License. The aim of AK toolbox is to provide a set of Matlab functions, which are independent of Matlab Bioinforamtics Toolbox, for coevolution anaylsis for MSA. At present, co-evolution methods available in this package are Statistical Coupling Analysis (SCA), Explicit Likelihood of Subset Covariance (ELSC), Mutual Information (MI), Observed Minus... -
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MRiLab
A Numerical MRI Simulation Platform
The MRiLab project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MRiLab/ The MRiLab is a numerical MRI simulation package. It has been developed and optimized to simulate MR signal formation, k-space acquisition and MR image reconstruction. MRiLab provides several dedicated toolboxes to analyze RF pulse, design MR sequence, configure multiple transmitting and receiving coils, investigate magnetic field related properties and evaluate real-time... -
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CMake BASIS
Build system And Software Implementation Standard
The CMake Build system And Software Implementation Standard makes it easy to create sharable software and libraries that work together. This is accomplished by combining and documenting some of the best practices and utilities available. More importantly, BASIS supplies a fully integrated suite of functionality to make the whole process seamless! Check out the web site for more information. The Git repository of this project is hosted on GitHub. Some interesting facts about this project... -
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Gene-Environment iNteraction Simulator 2
A tool able to simulate gene-environment and gene-gene interactions.
Gene-Environment iNteraction Simulator 2 (GENS2) simulates interactions among two genetic and one environmental factor and also allows for epistatic interactions. GENS2 is based on data with realistic patterns of linkage disequilibrium, and imposes no limitations either on the number of individuals to be simulated or on number of non-predisposing genetic/environmental factors to be considered. The GENS2 tool is able to simulate gene-environment and gene-gene interactions. To make the... -
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Development of new data assimilation techniques for ocean models
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SoundRuler is a tool for acoustic analysis, graphing and teaching. It interactively recognizes and measures 35 temporal and spectral properties of each sound in a file. It also features several measurement, graphing and didactic modules.
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Orbit Wizard
Educational open source tool for the design of geocentric orbits
Orbit Wizard is an educational open source tool developed in Matlab GUIDE for the design and visualization of geocentric orbits. The current version is in an early phase of development. Please employ the Orbit Wizard forum to report bugs and suggestions. The developers of Orbit Wizard are Álvaro Romero Calvo and Fernando Soler Lanagrán. Orbit Wizard is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License v2.0 External... -
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TraceX
MatLab App for calculating fitting isotopic exchange profile data
MatLab App for calculating fitting isotopic exchange profile data. Developed for measuring self-diffusivity and effective surface exchange coefficient of ion conducting materials. Requires MatLab image processing toolbox If you use this tool for you research, please cite my PhD thesis: Cooper, S. J. Quantifying the Transport Properties of Solid Oxide Fuel Cell Electrodes. (Imperial College London, 2015). @phdthesis{SJCooper2015, author = {Cooper, S. J.}, number =... -
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Volterra2.0
Volterra series Identification Tool
Orthogonal method for the Identification of Volterra series. It is an extension of Lee-Schetzen method with two major improvments: 1. Reduced identification uncertainty in diagonal kernel points. 2. Possibility to identify each Volterra kernel with an input with different variance. This feature reduces the identification noise on lower order kernels and improve the "resolution" on higher order kernels. For reference see: Simone Orcioni. Improving the approximation ability of...