Search Results for "linux command line" - Page 2

Showing 129 open source projects for "linux command line"

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  • 1

    mflab

    modflow laboratory

    Matlab based scripting to set up, run and analyze groundwater model using (different versions of) MODFLOW (+SWI), MODPATH6, MT3DMS and SEAWAT.
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  • 2
    RAFTS3

    RAFTS3

    Rapid Alignment Free Tool for Sequences Similarity Search

    RAFTS3 can perform high-speed protein search comparisons locally using a desktop computer or laptop. RAFTS3 performed searches many times faster than those with BLASTp against large protein databases such as NR and Pfam, with a small loss of sensitivity depending on the similarity degree of the sequences. RAFTS3 is a new alternative for fast comparison of protein sequences, genome annotation and biological data mining. Preprint: http://dx.doi.org/10.1101/055269 Precomputed databases...
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  • 3
    Yet Another Audio Feature Extractor is a toolbox for audio analysis. Easy to use and efficient at extracting a large number of audio features simultaneously. WAV and MP3 files supported, or embedding in C++, Python or Matlab applications.
    Downloads: 0 This Week
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  • 4
    FieldTrip

    FieldTrip

    The MATLAB software toolbox for MEG and EEG analysis

    FieldTrip is the Matlab toolbox for EEG and MEG data. It includes algorithms for simple and advanced analysis, such as importing, preprocessing, time-frequency analysis, source reconstruction, statistical testing and connectivity analysis.
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  • 5
    MATAA (Mat's Audio Analyzer) is a flexible and versatile audio analysis system based on Matlab or GNU Octave. MATAA was removed from SourceForge. Please visit https://github.com/mbrennwa/mataa for further information.
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  • 6

    FGAP

    an automated gap closing tool

    Development version: https://github.com/pirovc/fgap FGAP aims to improve genome sequences by merging alternative assemblies or incorporating alternative data, analyzing the gap region and indicating the best sequence to close the gap.
    Downloads: 0 This Week
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  • 7
    IDL2Matlab is an Automatic translation tool from an IDL program into Matlab and Scilab code. We do not guaranty a 100% conversion efficiency.
    Downloads: 2 This Week
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  • 8

    ApproxAdderLib

    Library of Approximate Adders

    We provide MATLAB and Verilog Models of GeAr, and previously proposed adders (ACA-I, ETAII, ACA-II and GDA) at http://sourceforge.net/projects/approxadderlib/ GeAr is a low latency Generic Accuracy Configurable Adder that provides a higher number of potential configurations compared to state-of-the-art approximate adders, thus enabling a high degree of flexibility and trade-off between performance and output quality. These MATALB and Verilog models can allow software programmer as well as...
    Downloads: 3 This Week
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  • 9

    DVB LDPC

    Different LDPC Libraries for DVB-T2/S2

    Provides more than one different set of LDPC encoder and decoder, mainly to work with the DVB-T2 Common Simulation Platform Be sure to read the Wiki!
    Downloads: 0 This Week
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  • 10
    nn22 Basic Neural Networks for Octave

    nn22 Basic Neural Networks for Octave

    Simple .m files, Basic Neural Networks study for Octave (or Matlab)

    --> For a more detailed description check the README text under the 'Files' menu option :) The project consists of a few very simple .m files for a Basic Neural Networks study under Octave (or Matlab). The idea is to provide a context for beginners that will allow to develop neural networks, while at the same time get to see and feel the behavior of a basic neural networks' functioning. The code is completely open to be modified and may suit several scenarios. The code...
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  • 11
    psignifit is a toolbox to fit psychometric functions and test hypotheses on psychometric data. This is version 3 which will now predominantly support python.
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    Downloads: 3 This Week
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  • 12

    flow visualization toolbox

    matlab 2D image processing GUI toolbox for flow visualization

    .... Both GUI and command line interface are provided for newbie and advanced user. Image can be processed into contour image, matlab mat and tecplot data. This toolbox can be conveniently extended for 2D image processing in other disciplines, for example, surface stress measurement, inferred thermograph, PIV. See developer guide for HOWTO. * example project.mat and calib.mat use abs path will not work for you directly. pl. rebuild yours according to my youtube tutorial
    Downloads: 0 This Week
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  • 13
    C++, Matlab and Python library for Hidden-state Conditional Random Fields. Implements 3 algorithms: LDCRF, HCRF and CRF. For Windows and Linux, 32- and 64-bits. Optimized for multi-threading. Works with sparse or dense input features.
    Downloads: 0 This Week
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  • 14
    Matlab/Octave implementation of the 2D Rigorous Coupled Wave Analysis
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    Downloads: 1 This Week
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  • 15
    AVRS performs spatial 3D-sound processing allowing the arbitrary placement of sound source in auditory space. The main goal is to develop a genuine experimental flexible platform, that runs in a general-purpose architecture computer (standard hardware and software).
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  • 16
    OpenFlux2 is an extended version of OpenFLUX (https://sourceforge.net/projects/openflux/) - the modern MATLAB-based modelling software for 13C flux analysis (MFA). The following features were implemented in OpenFLUX2, which were not present in original software: integrated support for calculation and analysis of parallel labeling experiments (PLE), extended statistical analysis of parameter estimation results, calculation of fluxes and measurements correlation, structural identifiability...
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  • 17
    Global Land Use and technological Evolution Simulator.
    Downloads: 0 This Week
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  • 18

    MatPicarro

    Load and manipulate Picarro data files with Matlab or GNU Octave

    A collection of m-files to load and manipulate Picarro data files with Matlab or GNU Octave.
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  • 19

    nail_systems_biology

    NAIL is a toolset for network analysis in the life sciences

    The NAIL (Network Analysis and Inference Library) project is a set of tools for solving problems in the life sciences using network (graph) approaches. NAIL includes methods for creating networks, analysing and comparing networks, and for visualising or presenting the results. These methods are designed as self-contained platform-independent components which can be called either from another program, or from a command line. Modelling biological systems as networks (graphs) is becoming...
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  • 20
    openGPS
    Open Source Implementations for 3D-Surface Characterisation Algorithms according to ISO 25178 (Geometric Product Specification) in verifiable pseudocode (MATLAB). Implementation of an XML-based file exchange format according to upcoming ISO 25178-72.
    Downloads: 2 This Week
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  • 21
    Fast Finite Element Method implementation in native MATLAB.
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  • 22
    Matlab Community Detection Toolbox

    Matlab Community Detection Toolbox

    CDTB is a MATLAB toolbox which performs Community Detection

    ... the functions from the MATLAB command line; or he can write his own code, incorporating the CDTB functions; or he can use the Graphical User Interface (GUI) which automates the community detection and includes some data visualization options.
    Downloads: 0 This Week
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  • 23
    Acoustic FDTD Solver (AC2D) -- is a software to simulate acoustic wave propagation in two dimensions based on the finite-difference time-domain (FDTD) method.
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  • 24
    LAVA for AFM

    LAVA for AFM

    Lloyd's Algorithm-based Volumetric Analysis for AFM Images

    This MATLAB-based program enables analysis of AFM images. In particular, it allows the user to measure the volume of all distinguishable features in an image and to isolate and sort those particles. As the name implies, LAVA uses Lloyd's Algorithm, also known as k-means sorting, to identify a small set of volumes representative of the actual distribution of particle in the image. Although developed for determining feature volume, LAVA is also completely compatible with other types of...
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  • 25

    abc-sde

    approximate Bayesian computation for stochastic differential equations

    A MATLAB toolbox for approximate Bayesian computation (ABC) in stochastic differential equation models. It performs approximate Bayesian computation for stochastic models having latent dynamics defined by stochastic differential equations (SDEs) and not limited to the "state-space" modelling framework. Both one- and multi-dimensional SDE systems are supported and partially observed systems are easily accommodated. Variance components for the "measurement error" affecting the...
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