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primeHandle is a set of data management tools in support of the PrIMe Initiative (http://primekinetics.org). primeHandle includes graphical user interfaces for searching through data collections, editing and submitting data to the PrIMe Data Depository.
A graphical MatLab framework for estimating the parameters of, modeling and simulating static and dynamic linear and polynomial systems in the errors-in-variables context with the intent of comparing various estimation strategies.
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JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.
A framework for solving large systems of linear equations (Ax=b) in a distributed network using different iterative methods. The solver is written on Java, can be run on Windows or Linux. The solver is compatible with either MPICH2 or mpj-express.
MATLAB Engine for Java is a library that uses the C API of the MATLAB Engine to: put variables from Java to Matlab, evaluate Matlab commands, get results from Matlab to Java.
The Databionics ESOM Tools offer many data mining tasks using Emergent Self-Organizing Maps. Visualization, clustering, and classification of high-dimensional data using databionics principles can be performed interactively or automatically.
A tool based on the model proposed by Bellman & Zadeh (1970) fuzzy logic (fuzzy sets) decision support paper. The first version of the application was developed in Java (pure java + jgoodies and some other APIs).
Now it is being rewritten using nebular, a pure Java fuzzy API.
ReactionLab is a software package aimed for a unified computer environment to kinetic modeling of chemical reaction systems. The present implementation is founded on Matlab and Java-Swing GUI, with an interface to legacy C (and Fortran) codes.
mlearn is a gradient based learning toolbox for matlab. While it is fairly simple to build a neural network, it is designed for ease of implementing new kind of gradient based architecture.
Extended Bioaccumulation Framework (ExBAF) is a tool for assessing bioaccumulation in foodwebs. Supports several bioaccumulation models and provides tools for analysis and visualization.
Warning! this project is not active anymore.
An open-source OMR application written in MATLAB, capable of processing various pen or pencil marked documents. The document form is fully customizable so that common surveying forms as well as academic omr-based exam sheets can be processed.
A library for handling vectors, tensors, and more.
VectTens is an object-oriented numerical library designed to manipulate vectors, tensors, and other mathematical quantities in a simple and efficient manner.