Search Results for "interface" - Page 2
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Showing 128 open source projects for "interface"
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ANDTool
Analysis Nuclei DAB (AND) Tool
Analysis Nuclei DAB (AND) Tool is a Graphical User Interface (GUI) to analyse microscopy images representing cells with nuclei stained using DAB dyes. The tool requires as input the original RGB images, and the FastRed, FastBlue, DAB channel, easily obtained using the Fiji function: "ImageJ" -> "Image" -> "Colour Deconvolution" -> "FastRed FastBlue DAB" Then, the tool first segment the nuclei using the FastBlue channel and the DAB channel, and then computes statistics by subdividing the sample in three regions according to the FastRed channel: a dark-red ROI, a light-pink ROI and a white ROI. ... -
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KLT-IV v1.0 has been designed to offer a user-friendly graphical user interface for the determination of river flow velocity and river discharge using videos acquired using a variety of fixed and moving platforms. KLT-IV employs optical flow and computer vision techniques for the tracking of features present on the river surface with pixel displacements being converted to real-world velocities using an optimised camera model approach.
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LIPRAS, Peak Fitting Software
Peak fitting diffraction data
LIPRAS v466 LIPRAS [LEEP-ruhs], short for Line-Profile Analysis Software, is a graphical user interface for least-squares fitting of Bragg peaks in powder diffraction data. For any region of the inputted data, user can choose which profile functions to apply to the fit, constrain profile functions, and view the resulting fit in terms of the profile functions chosen. If you use LIPRAS for your research, please cite it: Giovanni Esteves, Klarissa Ramos, Chris M. -
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An alignment-free standalone tool with interactive graphical user interface for DNA sequence comparison and analysis
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TauFactor
MatLab App for calculating the tortuosity factor of microstructure
Please contact the author at sjc08@ic.ac.uk for any questions or if you wish to cite this application in a academic study. Journal paper available here: http://www.sciencedirect.com/science/article/pii/S2352711016300280 TauFactor is a MatLab application for efficiently calculating the tortuosity factor, as well as volume fractions, surface areas and triple phase boundary densities, from image based microstructural data. The tortuosity factor quantifies the apparent decrease in... -
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Phenalysis
Analyze agronomic plant research plots in aerial orthomosaic images.
A graphical user interface to import, analyze and export plots from orthomosaic images of agronomic trials. Please cite the following reference in your work if you use Phenalysis: Khan Z and Miklavcic SJ (2019) An Automatic Field Plot Extraction Method From Aerial Orthomosaic Images. Front. Plant Sci. 10:683. doi: https://doi.org/10.3389/fpls.2019.00683 This tool is being developed through the sponsorship of the Australian Research Council's Industrial Transformation Research Hub on Wheat in a Hot and Dry Climate. ... -
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PsPM
A matlab suite for Psycho-Physiological Modelling
PsPM is a powerful tool for psychophysiological modelling. It includes linear convolution models and non-linear models for SCR, and allows for modelling of other signals, too. A flexible import interface and many utilities make this software a standalone tool. IMPORTANT: As of 04.11.2019, the official code repository for PsPM has been moved to https://github.com/bachlab/PsPM . In order to check the latest releases, discussion and bug reports, please refer to our new repository. Although this website will maintained to provide further releases, there will be no active development on the SVN repository. ... -
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Liberal Learning Seminar
Code for a freshman seminar in animal behavior
...The program will combine several simulation models and allow students to alter parameters and use computers to study animal behavior. All student interactions will be through a friendly user interface -- no coding is required by students. -
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Sensitizer
A toolset to automate STOP analysis with Zemax OpticStudio
SENSITIZER is an ESO software toolset written in Matlab and Mathematica aiming at automating some Structural/Thermal/Optical Performance (STOP) sensitivity analyses with Zemax OpticStudio (ZOS). The core code of SENSITIZER runs in MATLAB and drives ZOS in the background through the ZOS-API interface, based on .NET. The output is saved in the MATLAB file format and can be post-processed using MATLAB and/or Mathematica routines. The optical system to analyze is defined in a normal Zemax lens file. The core data structure of SENSITIZER is an optical group, which can be any optical surface in the lens file or a set of subsequent surfaces. ... -
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GVAR
The GVAR Toolbox 1.1 is designed for the purpose of GVAR modelling.
...L.Vanessa Smith's project Exploring International Economic Linkages Using a Global Model, the GVAR Toolbox 1.1 is the second release of a collection of MatLab procedures with an Excel-based interface, designed for the purpose of GVAR modelling. The GVAR modelling approach provides a general yet practical global modelling framework for the quantitative analysis of the relative importance of different shocks and channels of transmission mechanisms. This makes it a suitable tool for policy analysis, although it has been used in a number of other contexts, including analysing credit risk and evaluating the UK entry into the Euro. ... -
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ATLAS_mPBPK
Modeling and Simulation of mPBPK models
ATLAS mPBPK is a MATLAb-based tool for modeling and Simulation of minimal Physiology Based Pharmacokinetic (mPBPK) models of small and large molecules. The tool enables the users to perform: i) PK data visualization, ii) simulation, iii) parameter optimization, and iv) local sensitivity analysis (SA) of mPBPK models in a simple and efficient manner. -
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ConvNet Burden
Memory consumption and FLOP count estimates for convnets
convnet-burden is a MATLAB toolbox / script collection estimating computational cost (FLOPs) and memory consumption of various convolutional neural network architectures. It lets users compute approximate burdens (in FLOPs, memory) for standard image classification CNN models (e.g. ResNet, VGG) based on network definitions. The tool helps researchers compare the computational efficiency of architectures or quantify resource needs. Estimation of memory consumption (e.g. feature map sizes,... -
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A framework to run MATLAB programs as batch jobs. Features a structured input description, integrity constraints and GUI.Independent parts of a job can execute in parallel on a cluster computer. Developed at Freiburg Brain Imaging (FBI) - http://fbi.uniklinik-freiburg.de/
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Dynamic Linkage
Dynamic Linkage Social Aggregation Model
This project will create a user-friendly modeling system for studying animal social aggregations. The model codifies the a new hypothesis that the animal's state, kinematics, and the group's emergent properties are dynamically linked together, with each one affecting the others. The model will be constructed using Object-Oriented MatLab. -
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This is a public repository for the Accelerator Toolbox, Matlab based accelerator physics code.
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This is a MATLAB model of an end-to-end chain compliant to the DVB-T2 standard (ETSI EN 302 755 available from www.etsi.org). It was originally developed within the DVB consortium (www.dvb.org) by AICIA, BBC, Pace, Panasonic and SIDSA.
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GTK+ IOStream
GTK+iostream, Data plots, ORB, Neural Networks, WSOLA
Create GTK+ interfaces using IOStream style code. Its simple and quick! Also providing simple data plotting (similar to Matlab/Octave), ORB (Object Request Broker), and Neural Network computations. You can create GTK+ GUIs in a few lines of code. Labels<<"Thanks for reading"; (HBox<<Labels).show(); or even one line : (HBox() << (Labels()<<"Thanks for reading")).show(); Inline code destructs the classes, but leaves the widgets/callbacks operating. This is great for embedded... -
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mctc4bmi
Matrix and Tensor Completion for Background Model Initialization
MCTC4BMI (Multimodal Compressed Sensing and Tensor Decomposition for Brain-Machine Interfaces) is a MATLAB toolbox designed to process and analyze EEG data. It applies compressed sensing and tensor decomposition techniques to improve brain-machine interface (BMI) performance. -
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MetaMIS
Metagenomic Microbial Interaction Simulator
...The most distinguished feature of MetaMIS is its ability to retain maximum population of rare species in an ecological interactive network. MetaMIS provides a user-friendly interactive stand-alone graphical interface for scientists without programming skills to investigate the interactions among microorganisms. 2017.03.09 MetaMIS_v1.02: - Create an option to export consensus table. - Decimal time is allowed. 2016.12.16 MetaMIS_v1.01: - fix the memory-out problem for larger abundance table (>500 OTUs). - add three items to constrain the total number of running interaction networks 2016.11.17 MetaMIS_v1 -
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Gene-Environment iNteraction Simulator 2
A tool able to simulate gene-environment and gene-gene interactions.
...GENS2 is written in Python language and takes advantage of operators and modules provided by the simuPOP simulation environment. It can be used through a graphical or a command-line interface. -
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MRiLab
A Numerical MRI Simulation Platform
The MRiLab project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MRiLab/ The MRiLab is a numerical MRI simulation package. It has been developed and optimized to simulate MR signal formation, k-space acquisition and MR image reconstruction. MRiLab provides several dedicated toolboxes to analyze RF pulse, design MR sequence, configure multiple transmitting and receiving coils, investigate magnetic field related properties and evaluate real-time... -
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MATLAB Schemer
Apply and save color schemes in MATLAB with ease
MATLAB Schemer is a utility that makes it simple to import, apply, and export color scheme themes for MATLAB’s user interface and editor. It enables transferring customized themes between MATLAB installations or sharing color schemes among users. This MATLAB package makes it easy to change the color scheme (a.k.a. theme) of the MATLAB display and GUI. Color schemes can be easily imported by running schemer_import at the MATLAB command prompt, without needing any inputs. -
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Waterloo
Java-based scientific graphics
Java-based scientific graphics with support for Java, Groovy, MATLAB, Python, the R statistical environment, Scala and SciLab. -
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TVMAT-Project
Projeto de viabilização de canal de TV utilizando o MatLab.
Aplicativo para auxílio na elaboração de projetos de viabilização de canais de TV. Baseado na regulamentação nº284 de 7 de dezembro de 2001. Aplicação desenvolvida em MatLab. Utiliza o método da interpolação para estimar os valores das curvas de intensidade de campo, utilizadas nos cálculos. Aplicação destinada a estudantes do curso de engenharia de telecomunicações. -
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ChelomEx
Isotope assisted discovery of metal chelating agents from LC-MS data
ChelomEx identifies chromatographic features of metal complexes and associated free ligands or other related adducts in high-resolution LC-MS data. A built-in graphical user interface and compound library aid in the efficient evaluation of the results. If you use ChelomEx for your research, please cite our Analytical Chemistry paper that describes the software (http://dx.doi.org/10.1021/ac503000e). To comment, send bug reports or suggestions for additional features to be implemented in future versions please send me a message. ...
