Search Results for "network analysis"
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Showing 35 open source projects for "network analysis"
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Social Network Visualizer
Social Network Analysis and Visualization software
Visit our new site: http://socnetv.org Social Network Visualizer (SocNetV) is a social network analysis and visualization application. You can draw a social network (graph/digraph) or load an existing one (GraphML, UCINET, Pajek, etc), compute cohesion, centrality, community and structural equivalence metrics and apply various layout algorithms based on actor centrality or prestige scores (i.e. -
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Gonum
Set of numeric libraries for the Go programming language
...Gonum contains libraries for matrices and linear algebra; statistics, probability distributions, and sampling; tools for function differentiation, integration, and optimization; network creation and analysis; and more. We encourage you to get started with Go and Gonum if you are tired of sluggish performance, and fighting C and vectorization, and also if you are struggling with managing programs as they grow larger. Get Gonum if you want code to be fully transparent, and want the ability to read the source code you use. ... -
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Data Envelopment Analysis using Stata
Unified Data Envelopment Analysis commands for Stata
...The package supports radial technical efficiency (CCR/BCC), SBM, additive model, radial and SBM super-efficiency, multiplier form, directional distance function, cost, revenue, profit, allocative efficiency, FDH, imprecise DEA, undesirable outputs, SBM with undesirable outputs, and congestion analysis. Extension commands provide Malmquist productivity index, window analysis, network DEA, cross-efficiency, bootstrap DEA, fuzzy DEA, and research-oriented game-theoretic DEA diagnostics. The release includes Stata help files, an OECD education application, and forthcoming Stata article and supplement materials. -
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ShinyCardinal
Mass spectrometry imaging data analysis software tool
ShinyCardinal is an open-source and vendor-neutral software that covers all steps in MSI data analysis. It leverages the R package Cardinal to enhance its functionalities by introducing several additional important features, such as the removal of background noises and matrix peaks, deisotoping, absolute quantification, network analysis, and metabolite identification. ShinyCardinal is built as a desktop application with a conveniently designed graphic user interface to provide users a stable, consistent, and user-friendly data analysis framework. ... -
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SOFA is a statistics, analysis, and reporting program with an emphasis on ease of use, learn as you go, and beautiful output.
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Algorithms Math Models
MATLAB implementations of algorithms
Algorithms_MathModels is a large MATLAB collection of algorithms and solved examples targeted at students and teams preparing for mathematical modeling competitions (national and international contests like MCM/ICM). The repository gathers implementations and case studies across many topics commonly used in contest solutions: optimization (linear, integer, goal and nonlinear programming), heuristic and metaheuristic methods (simulated annealing, genetic algorithms, immune algorithms), neural... -
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gsasnp2
PubMed ID: 29562348 / DOI: 10.1093/nar/gky175
...It also provides both local and global protein interaction networks in the associated pathways. * Article: SYoon, HCTNguyen, YJYoo, JKim, BBaik, SKim, JKim, SKim, DNam, "Efficient pathway enrichment and network analysis of GWAS summary data using GSA-SNP2", Nucleic Acids Research, Vol. 46(10), e60(2018). * PubMed ID: 29562348 * DOI: 10.1093/nar/gky175 -> PLEASE MOVE OR MAKE A COPY OF 'DATA' FOLDER INTO YOUR INTENSIVE TEST FOLDER (I.E. LINUX, MAC OR WINDOWS SPECIFIED FOLDER) TO ALLOW THE PROGRAM TO FIND THE PREDESIGNED DATA. * UPDATE NOTE: -> Sep-1-2020: add an update for Ubuntu-20.04. ... -
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Accord.NET Framework
Scientific computing, machine learning and computer vision for .NET
The Accord.NET Framework provides machine learning, mathematics, statistics, computer vision, computer audition, and several scientific computing related methods and techniques to .NET. The project is compatible with the .NET Framework. NET Standard, .NET Core, and Mono. -
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Kohonen neural network library is a set of classes and functions for design, train and use Kohonen network (self organizing map) which is one of AI algorithms and useful tool for data mining and discovery knowledge in data (http://knnl.sf.net).
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PMM-Lab
Predictive Microbial Modeling plug-in for KNIME
PMM-Lab is an open-source extension to the Konstanz Information Miner (KNIME). It consists of three components: • a library of KNIME nodes (called PMM-Lab), • a library of “standard” workflows • an HSQL database.to store experimental data and microbial models. Altogether these components are designed to ease and standardize the statistical analysis of experimental microbial data and the development of predictive microbial models (PMM). Users can apply PMM-Lab to proprietary or public... -
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...From the user's perspective, MDP is a collection of supervised and unsupervised learning algorithms and other data processing units that can be combined into data processing sequences and more complex feed-forward network architectures. From the scientific developer's perspective, MDP is a modular framework, which can easily be expanded. The implementation of new algorithms is easy and intuitive. The new implemented units are then automatically integrated with the rest of the library. The base of available algorithms is steadily increasing and includes signal processing methods (Principal Component Analysis, Independent Component Analysis, Slow Feature Analysis), manifold learning methods ([Hessian] Locally Linear Embedding), several classifiers, probabilistic methods (Factor Analysis, RBM), data pre-processing methods, and many others.
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Universal Java Matrix Package
sparse and dense matrix, linear algebra, visualization, big data
The Universal Java Matrix Package (UJMP) is an open source Java library which provides sparse and dense matrix classes, as well as a large number of calculations for linear algebra such as matrix multiplication or matrix inverse. Operations such as mean, correlation, standard deviation, replacement of missing values or the calculation of mutual information are supported, too. The Universal Java Matrix Package provides various visualization methods, import and export filters for a large... -
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NDN Backprop Neural Net Trainer implements the backpropagation functionality subset of the open source NeuronDotNet object library in a generic user friendly application.
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Myrtle
A simple programmable spreadsheet for learning statistics.
Myrtle is a simple programmable spreadsheet and statistical analysis software specifically designed for learning statistics. It provides the standard spreadsheet functionality one would expect like multiple tabbed sheets, relative and absolute row and column referencing in formulas, and a large catalog of built-in functions. Functions specific to logic and computer science, mathematics, probability, and statistics are available. Student's can easily create, customize, and update plots and... -
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imDEV
Tools for multivariate data visualization, exploration and analysis.
You may also like some newer work: http://createdatasol.com/ Project imDEV is an application of RExcel, which seamlessly integrates Excel and R for tasks focused on multivariate data visualization, exploration, and analysis. Interactive modules for dimensional reduction (imPCA), prediction (imPLS), feature selection, analysis of correlation (imCorrelations) and generation of networked structures (imGraph) provide an integrated environment for systems level analysis of multivariate data. -
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PyPedal is a Python module that provides tools for the manipulation of pedigrees, simple visualization of pedigrees, and the calculation of measures of genetic diversity from pedigrees.
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The final build of this software now is distributed in R, embedded in "RedeR': an R/Bioconductor package for hierarchical and nested network analysis... more about RedeR: http://bioconductor.org/packages/2.9/bioc/html/RedeR.html
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FNA is a command line tool for creating and analyzing financial networks with concepts developed in social network analysis and network science. NOTE: the project has been moved to http://code.google.com/p/financial-network-analyzer/
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Java Universal Network/Graph Framework
Java graph/network library
JUNG provides a common and extendible language for the modeling, analysis, and visualization of data that can be represented as a graph or network. New version now available on GitHub: https://github.com/jrtom/jung/releases/tag/jung-2.1 -
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Guanxi is a robust analysis and simulation application for Social Network Analysts. Guanxi allows researchers in the field to create, import, and export an endless array of networks, analyze their structure, and run custom dynamics over them.
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PlexBench is a cross-platform, web-enabled, analysis tool that is driven by a scalable backpropagation feed-forward neural network. It uses embedded Perl for scripting and is written in the style of an in-process Component Object Model (COM) C++ program.
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ENIAC: Electrical Network Interactive Analysis Console. Educational software originally made for the study and simulation of electrical LTI circuits, but which supply also a lot of mathematics computations, like complex, polynomial and matrix operations.
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ANNJ, Another Neural Network for Java is a neural network framework for the Java programming language. It is still in an early development stage, currently supporting only feed-forward type networks, but will soon be able to handle many other types.
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Java package to study a clustering model described in the paper \"Novel Clustering Algorithm Based Upon Games on Evolving Network\" by Q. Li, Z. Chen, Y. He and J-P. Jiang (in arxiv: http://arxiv.org/pdf/0812.5064v1), generalizations and similar issues.
