Showing 270 open source projects for "linux command"

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  • 1
    This software solves the Phylogeny problem using Median Networks. Exact and heuristic methods available. Input: an alignment and a reversible stepmatrix, output: (sub)optimal trees and their combinations. Steiner problem solver included.
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  • 2

    polynomial-roots-calculation

    Application for calculating the real roots of a polynomial

    Application for polynomial roots calculation. The application does the job by supposing the roots of the derivative function are known. This way, we can delimit the range where each possible root is in, and by applying Bolzano's theorem, we can find the zeroes. It is not a very eficient way, as we must calculate al the derivatives of the polinomial, implying very high numbers (n!), that make the needed precision increase, making the computational complexity for high-degree polinomials...
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  • 3

    SHA256-in-C

    SHA-256 Algorithm Implementation in C

    Downloads: 1 This Week
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  • 4

    SidClock

    *nix Sidereal Clock

    *nix Sidereal Clock Application
    Downloads: 0 This Week
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  • 5
    Pure C99 Quadratic Sieve 230-bit minute, RSA-100 factored, easily accessible on Windows and Linux. Hello and welcome at sourceforge.net, i'm your student at Université de Franche-Comté, Mon, 11 Jul 2022. This ~2500 lines Pure C factorization software : - is imediately compatible with Microsoft Windows, Linux (no one dependancy) - is a C99 command line factorizer from 0 to 300 bits (330 bits were factored in the lab) - is built so that you can easily use and test the software - use its own "big num" library named cint - use AVL trees to organize information - use Lanczos Block, a pure C iterative matrix eigenvalues finder algorithm - use Pollard's Rho algorithm to answer under 64 bits The Microsoft Windows executable is included in the zip, the readme.md gives you details. ...
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  • 6

    opbdp

    opbdp (non-linear) pseudo-Boolean optimization

    opbdp is an implementation in C++ of an implicit enumeration algorithm for solving (non)linear 0-1 (or pseudo-Boolean) optimization problems with integer coefficients. A research report describing the techniques used in opbdp is included.
    Downloads: 0 This Week
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  • 7

    GenReg

    Generation of regular graphs

    Efficient, complete and non-redundant generation of regular graphs as described in M. Meringer: Fast Generation of Regular Graphs and Construction of Cages. Journal of Graph Theory 30, 137-146, 1999.
    Downloads: 2 This Week
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  • 8

    ADaMSoft

    Open Source and data mining software

    ADaMSoft is a free and Open Source Data Mining software developed in Java. It contains data management methods and it can create ready to use reports. It can read data from several sources and it can write the results in different formats.
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    Downloads: 4 This Week
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  • 9

    yafu

    Automated integer factorization

    Check yafu on github for the latest code. YAFU (with assistance from other free software) uses the most powerful modern algorithms (and implementations of them) to factor input integers in a completely automated way. The automation within YAFU is state-of-the-art, combining factorization algorithms in an intelligent and adaptive methodology that minimizes the time to find the factors of arbitrary input integers. Most algorithm implementations are multi-threaded, allowing YAFU to fully...
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    Downloads: 106 This Week
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  • 10
    statTools

    statTools

    Command-line tools for simple statistics

    statTools contains command-line tools for simple statistics
    Downloads: 0 This Week
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  • 11

    ExRandom

    Sampling exactly from the normal and exponential distributions

    ExRandom is a small header-only C++11 library for exact sampling from the normal, exponential, and discrete normal distributions (provided that the underlying generator is perfect). This library provides an implementation of the algorithms described in C. F. F. Karney, Sampling exactly from the normal distribution, ACM Trans. Math. Software 42(1), 3:1-14 (Jan. 2016), https://doi.org/10.1145/2710016, https://arxiv.org/abs/1303.6257.
    Downloads: 3 This Week
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  • 12
    Programmer's library for random numbers. Also random number generator testing code. Intended for simulation, games and "Monte-Carlo" algorithms.
    Downloads: 3 This Week
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  • 13
    gsasnp2

    gsasnp2

    PubMed ID: 29562348 / DOI: 10.1093/nar/gky175

    * GSA-SNP2 is a successor of GSA-SNP (Nam et al. 2010, NAR web server issue). GSA-SNP2 accepts human GWAS summary data (rs numbers, p-values) or gene-wise p-values and outputs pathway genesets ‘enriched’ with genes associated with the given phenotype. It also provides both local and global protein interaction networks in the associated pathways. * Article: SYoon, HCTNguyen, YJYoo, JKim, BBaik, SKim, JKim, SKim, DNam, "Efficient pathway enrichment and network analysis of GWAS summary data...
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  • 14
    APBS

    APBS

    Biomolecular electrostatics software

    This software has moved to http://www.poissonboltzmann.org/.
    Downloads: 0 This Week
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  • 15
    PlanetPack

    PlanetPack

    Radial-velocity & transits analysis tool for exoplanets

    PlanetPack is a software tool developed to facilitate the radial-velocity time-series analysis for the goal of exoplanets detection, characterization, and basic dynamical simulations. The description of the main theoretic concepts, statistical methods and algorithms that PlanetPack implements, is given in the following refereed papers: R.V. Baluev 2013, Astronomy & Computing, V. 2, P. 18 (initial release); R.V. Baluev 2018, Astronomy & Computing, V. 25, P. 221 (update 3.0). The...
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  • 16
    Generic predictor that not depends data itself, this assumes original data is in L2(R) and there exists sampling theorem.
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  • 17
    ObjectVolume

    ObjectVolume

    Calculates Volume, Surface Area & Centroid of a Closed Triangular Mesh

    The ObjectVolume program calculates the volume, surface area and centroid of a closed triangular mesh represented in an object file (.obj). The process goes through the list of triangles that make up the surface and, for each triangle, forms a tetrahedron with an external point. The program uses the origin (0,0,0). The volume of the tetrahedron is then calculated. Tetrahedrons with back facing triangles are added and those with forward facing triangles are subtracted yielding the object...
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  • 18

    SparthMP

    SparthMP is an ANSI-C math library for Multi-Precision calculations

    SparthMP is an ANSI-C math library for Multi-Precision calculations, i.e. beyond float/double domain. It supports regulated accuracy of calculations. For algorithm design with this library you should have an understanding of rounding errors in math.
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  • 19
    CLISP - an ANSI Common Lisp
    CLISP is a portable ANSI Common Lisp implementation and development environment by Bruno Haible. Interpreter, compiler, debugger, CLOS, MOP, FFI, Unicode, sockets, CLX. UI in English, German, French, Spanish, Dutch, Russian, and Danish.
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    Downloads: 612 This Week
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  • 20
    Software for exploring & solving polyform puzzles, written in Python. Includes solvers for: pentominoes/polyominoes, solid pentominoes, Soma cubes, polycubes, polyiamonds, polyhexes, polysticks, and more to come.
    Downloads: 1 This Week
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  • 21

    OpenM++

    OpenM++: open source microsimulation platform

    IMPORTANT: ========== Our project home page: https://openmpp.org Our latest source code and release available at: https://github.com/openmpp/main/releases/latest Our documentation available at: https://github.com/openmpp/openmpp.github.io/wiki SourceForge files still exist for historical reason. OpenM++ is an open source microsimulation platform inspired by and compatible with Modgen. OpenM++, compared to its closed source predecessor Modgen, has advantages like portability,...
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  • 22

    CUDALucas

    A program that uses CUDA to accelerate the Lucas Lehmer test.

    CUDALucas is a program implementing the Lucas-Lehmer primality test for Mersenne numbers using the Fast Fourier Transform implemented by nVidia's cuFFT library. You need a CUDA-capable nVidia card with compute compatibility >= 1.3 up to CUDA 6.5, 2.x up to 7.0 and 3.x for >=CUDA 8.0 . The program is run from the command line, however it can be configured without using a terminal. See the Wiki for more details. README for new users available at the Files/Downloads page.
    Downloads: 7 This Week
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  • 23
    CutePy

    CutePy

    Lightweight Qt-based Python console with variable explorer and history

    CutePy is a lightweight Qt-based Python 3 console with variable explorer, command history, syntax highlighting and customizable startup script. Originally it was developed for simple scientific calculations as a replacement for e.g. Windows calculator or Python IDLE. Therefore its main aim is to start fast and provide more comfortable dealing with variables based on the Python language. However in the end it is a regular Python console and therefore can be used for almost any task.
    Downloads: 0 This Week
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  • 24
    C++ BigInt class

    C++ BigInt class

    C++ BigInt class enables to work with arbitrary precision integers

    C++ BigInt class that enables the user to work with arbitrary precision integers. Latest Version: 10.3 (2019-03-06)
    Downloads: 6 This Week
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  • 25
    Finite Transform Library

    Finite Transform Library

    A Library is for Finite Transforms

    The Library is for Finite Transforms such as the Number Theoretic Transform (NTT) and Finite Radon Transform (FRT). Current modules include NTTW for NTTs with high resolution (microsecond) timing, basic array and imaging. The transforms are optimised for performance.
    Downloads: 0 This Week
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