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C++ and Python based open source graph visualization and analysis software, primarily intended for use in the analysis of social networks (other applications are also conceivable).
Tk-based standalone graphing system and extensible graphing library with a huge range of 2d modes (maybe 3d soon?) written in Python (Python/Tk are 100% cross platform)
MayaVi is a free, cross platform, easy to use scientific data visualizer. It provides a GUI to ease the visualization process, is written in Python and uses the Visualization Toolkit (VTK) for the graphics.
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SciGraphica is a scientific data visualization and analysis application, supplying many of the basic plotting features for 2D and 3D charts. It features opening several worksheets and plots to work with at the same time and PS output.
Robotic Manipulator Development and Simulation Environment in Python and Blender. IMPORTANT: Development moved to github. http://github.com/ajnsit/r2d3
Geomatrix, collection of C/C++ libraries to be used for symbolic description of n-dimensional geometric models. Operates internally with a representation that constructs complex objects based on primitives, allowing loss-less modifcation of models.
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Real-time data visualization. Graphically view your data as it's being generated. Peakster is a very intuitive GUI written entirely in Python, which monitors data at regular intervals and uses gnuplot to render 2D, 3D and superimposed plots.
MatPy is a Python package for numerical linear algebra and plotting with a
MatLab-like interface. It currently consists of wrappers around Numeric and
Gnuplot packages, but eventually may be implemented directly in C/C++, or as
interface to Octave.
RGnome is a gtk based frontend for GNU R, which is a widely used language for statistical computing. It features a fully working R console and an editor with syntax highlighting.