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Optimization toolbox for analyzing metabolic networks
Metaopt contains direct C++ implementations of metabolic analysis methods based on flux optimization. It is mainly developed to solve thermodynamically constrained FBA and FVA (tFVA) efficiently.
The NUMIPAD library implements several methods/algorithms to solve inverse problems and adaptive decomposition (i.e. Tikhonov regularization, Total Variation, Basis Pursuit, etc.)