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PMM-Lab is an open-source extension to the Konstanz Information Miner (KNIME). It consists of three components:
• a library of KNIME nodes (called PMM-Lab),
• a library of “standard” workflows
• an HSQL database.to store experimental data and microbial models.
Altogether these components are designed to ease and standardize the statistical analysis of experimental microbial data and the development of predictive microbial models (PMM).
A java library for geometry applications. Provides a general framework for manipulating and creating geometric primitives, computing intersection points between shapes, composing them to create new shapes, and performing some measurements.
Important note: the repository has now moved to GitHub: https://github.com/dlegland/javaGeom
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approximate Bayesian computation for stochastic differential equations
A MATLAB toolbox for approximate Bayesian computation (ABC) in stochastic differential equation models.
It performs approximate Bayesian computation for stochastic models having latent dynamics defined by stochastic differential equations (SDEs) and not limited to the "state-space" modelling framework. Both one- and multi-dimensional SDE systems are supported and partially observed systems are easily accommodated. Variance components for the "measurement error" affecting the...
This is my first attempt at building a reusable framework for 3D applications (not an engine!), primarily for educational purpose and also because none of the already existing tools did satisfy me. No longer maintained.
The Tensor Voting Framework is a powerful technique for perceptual grouping, manifold learning, etc. It has proved to be a useful tool in the Computer Vision community. OpenTVF is an open source implementation of TVF.
Plexus is a Java library with specifications and implementations for generic graph data structures. Like the Java Collections Framework, vertices and edges are containers for arbitrary user-defined objects.
OSlash is a c++ framework for developing decentralized cloud computing services. It includes a programming environment and virtual machine for assembling networks of processing nodes coordinate their operations through message passing.
Quantifa is an F# open-source library for quantitative finance and risk management. Quantifa can be viewed as a functional programming version of QuantLib and QLNet. Currently, the Quantifa Team is looking for developers.
ANNJ, Another Neural Network for Java is a neural network framework for the Java programming language. It is still in an early development stage, currently supporting only feed-forward type networks, but will soon be able to handle many other types.
Combean is a Java framework for mathematical structures and optimization algorithms. Through a set of Java interfaces and JavaBeans-based config, Combean glues optimization codes together - leading to more interoperable, adaptable and flexible solutions.
Daixtrose ("Differentiable EXpression Templates - the Reusable Open Source Engine") is a C++ header library framework. With Daixtrose, building Expression Template (ET) libraries at home finally becomes easy.
JQuantity is a set of Java classes which enable developers to build scientific applications using quantities which are either exact or have known (bounded) errors. Quantities may include units, may be complex, non-scalar, etc. Extends java.math classes