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A famous scientific plotting package, features include 2D and 3D plotting, a huge number of output formats, interactive input or script-driven options, and a large set of scripted examples.

SOFA is a statistics, analysis, and reporting program with an emphasis on ease of use, learn as you go, and beautiful output.

* GSA-SNP2 is a successor of GSA-SNP (Nam et al. 2010, NAR web server issue). GSA-SNP2 accepts human GWAS summary data (rs numbers, p-values) or gene-wise p-values and outputs pathway genesets ‘enriched’ with genes associated with the given phenotype. It also provides both local and global protein interaction networks in the associated pathways. * Article: SYoon, HCTNguyen, YJYoo, JKim, BBaik, SKim, JKim, SKim, DNam, "Efficient pathway enrichment and network analysis of GWAS summary data...

newLISP for BSDs, LINUX, MacOS X, SunOS and Win32: small, fast 350+ functions, a -C-, MySQL, PostgreSQL, SQLite, ODBC, TCP/IP, UDP, XML, Java interface, string processing, regular expressions , math, financial, statistical functions, Win32 DLL

Vytics lets you query and plot csv data, Excel files, databases (SQL and NoSQL). You can also organize your queries, data and graphs into reports and projects.

The Universal Java Matrix Package (UJMP) is an open source Java library which provides sparse and dense matrix classes, as well as a large number of calculations for linear algebra such as matrix multiplication or matrix inverse. Operations such as mean, correlation, standard deviation, replacement of missing values or the calculation of mutual information are supported, too. The Universal Java Matrix Package provides various visualization methods, import and export filters for a large...

A collection of pure Python algorithms and data structures