Showing 217 open source projects for "learning linux command line"

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  • 1
    gsasnp2

    gsasnp2

    PubMed ID: 29562348 / DOI: 10.1093/nar/gky175

    ... using GSA-SNP2", Nucleic Acids Research, Vol. 46(10), e60(2018). * PubMed ID: 29562348 * DOI: 10.1093/nar/gky175 -> PLEASE MOVE OR MAKE A COPY OF 'DATA' FOLDER INTO YOUR INTENSIVE TEST FOLDER (I.E. LINUX, MAC OR WINDOWS SPECIFIED FOLDER) TO ALLOW THE PROGRAM TO FIND THE PREDESIGNED DATA. * UPDATE NOTE: -> Sep-1-2020: add an update for Ubuntu-20.04. You will need Boost library installed (sudo apt-get install libboost-all-dev) -> Mar-7-2018: revise header terms in the output file
    Downloads: 8 This Week
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  • 2
    APBS

    APBS

    Biomolecular electrostatics software

    This software has moved to http://www.poissonboltzmann.org/.
    Downloads: 0 This Week
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  • 3
    PlanetPack

    PlanetPack

    Radial-velocity & transits analysis tool for exoplanets

    PlanetPack is a software tool developed to facilitate the radial-velocity time-series analysis for the goal of exoplanets detection, characterization, and basic dynamical simulations. The description of the main theoretic concepts, statistical methods and algorithms that PlanetPack implements, is given in the following refereed papers: R.V. Baluev 2013, Astronomy & Computing, V. 2, P. 18 (initial release); R.V. Baluev 2018, Astronomy & Computing, V. 25, P. 221 (update 3.0). The...
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  • 4
    Generic predictor that not depends data itself, this assumes original data is in L2(R) and there exists sampling theorem.
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    Finance Automation that puts you in charge

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  • 5
    ObjectVolume

    ObjectVolume

    Calculates Volume, Surface Area & Centroid of a Closed Triangular Mesh

    The ObjectVolume program calculates the volume, surface area and centroid of a closed triangular mesh represented in an object file (.obj). The process goes through the list of triangles that make up the surface and, for each triangle, forms a tetrahedron with an external point. The program uses the origin (0,0,0). The volume of the tetrahedron is then calculated. Tetrahedrons with back facing triangles are added and those with forward facing triangles are subtracted yielding the object...
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  • 6
    CLISP - an ANSI Common Lisp
    CLISP is a portable ANSI Common Lisp implementation and development environment by Bruno Haible. Interpreter, compiler, debugger, CLOS, MOP, FFI, Unicode, sockets, CLX. UI in English, German, French, Spanish, Dutch, Russian, and Danish.
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    Downloads: 430 This Week
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  • 7

    Practically Random

    statistical tests & psuedo- random number generators (RNGs, PRNGs)

    Randon number generation & testing. The best suite of statistical tests for fast PRNGs anywhere. Multithreaded for speed, command line tools for automation, no upper limit on data size. Also, a variety of C++ pseudo-random number generators with well designed interfaces aimed at practical uses, not just research.
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    Downloads: 31 This Week
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  • 8
    Software for exploring & solving polyform puzzles, written in Python. Includes solvers for: pentominoes/polyominoes, solid pentominoes, Soma cubes, polycubes, polyiamonds, polyhexes, polysticks, and more to come.
    Downloads: 0 This Week
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  • 9
    C++ BigInt class

    C++ BigInt class

    C++ BigInt class enables to work with arbitrary precision integers

    C++ BigInt class that enables the user to work with arbitrary precision integers. Latest Version: 10.3 (2019-03-06)
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    Downloads: 158 This Week
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  • 10
    Finite Transform Library

    Finite Transform Library

    A Library is for Finite Transforms

    The Library is for Finite Transforms such as the Number Theoretic Transform (NTT) and Finite Radon Transform (FRT). Current modules include NTTW for NTTs with high resolution (microsecond) timing, basic array and imaging. The transforms are optimised for performance.
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  • 11

    libirt

    The new site is at http://psychometricon.net/libirt/

    The new site is at http://psychometricon.net/libirt/ Library of functions to estimate the items and abilities from the responses of subjects to a questionnaire. The IRT models supported are the logistic model, the multivariate logistic model, the graded model and smoothing by penalization and kernel.
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  • 12

    cocolib / light field suite

    CUDA library for continuous optimization and light field analysis

    Library for continuous convex optimization in image analysis, together with a command line tool and Matlab interface. Implements several recent algorithms for inverse problems and image segmentation with total variation regularizers and vectorial multilabel transition costs. Also included is a suite for variational light field analysis, which ties into the HCI light field benchmark set and givens reference implementations for a number of our recently published algorithms. *** NOTE...
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  • 13
    lottie vectors

    lottie vectors

    Create, display and process 2D vectors in a 3D window.

    ... something acting on a position with direction and magnitude. Finally you can give each position a tag to display on screen. This could be a common math symbol or greek letter, start/end signposts, or a number of the position either from the begining or after a reset. After all the information has been loaded for your dataset. Either passed over the command line, or as a text file. Lottie Vectors displays inside a figure that you can resize, rotate and turn 2D positions into a 3D picture.
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  • 14
    An R package for metrology. metRology provides classes and calculation and plotting functions for metrology applications, including measurement uncertainty estimation and (eventually) inter-laboratory metrology comparison studies.
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  • 15
    Fcalgs is a collection of standalone tools implementing algorithms for formal concept analysis.
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  • 16

    brl2mml

    A library to convert between braille and MathML

    brl2mml is a library that can perform conversion between braille and MathML. It currently supports UK Maths braille.
    Downloads: 0 This Week
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  • 17

    spectralHMM

    A spectral method for inferring selection from time series data

    ***WARNING*** This software was migrated to: https://github.com/popgenmethods/spectralHMM Support and updates will only be available at this new address. This software implements the algorithms described in the following paper: Steinrücken, M., Bhaskar, A. and Song, Y.S. A novel spectral method for inferring general diploid selection from time series genetic data. Annals of Applied Statistics, Vol. 8, No. 4 (2014) 2203-2222
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  • 18
    Lib Hyper Math for GCC (C++)

    Lib Hyper Math for GCC (C++)

    Library Hyper Math for GCC (C++)

    This library has complementary features to the "cmath" library. Here we present functions for trigonometric calculations (cot, sec, csc, acot, asec, acsc) and hyperbolic (coth, sech, csch, acoth, asech, acsch) and exponential (nthrt) calculations and more. The results are presented in radians. For results in degrees multiply 180/M_PI by radians or use function torad. For degrees multiply M_PI/180 or use todeg. For more libraries, go to:...
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  • 19
    Lib Finance Math GCC (C++) Lotus 123

    Lib Finance Math GCC (C++) Lotus 123

    Library Finance Math for GCC (C++)

    This library has the implementation of all financial functions in the Lotus 1-2-3 spreadsheet for C++ language, respecting the same nomenclature used (where possible). The financial features of this library are based on the collection of finely-tuned features found in the old Lotus 1-2-3 spreadsheet software. For more libraries, go to: https://sourceforge.net/u/augustomanzano/profile. To see my curriculum vitae go to: http://lattes.cnpq.br/8184615061457853. Augusto...
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  • 20

    MSU's Sparse Fourier Repository

    The Home of DMSFT, AAFFT, GFFT, and MSFFT.

    A collection of sparse Fourier transform codes developed by faculty at MSU. Currently codes for four different prototype sparse FFTs are here: 1.) DMSFT, implemented by Ruochuan Zhang. This is a fast, stable, noise robust, and *fully discrete* improvement on the ideas in GFFT below. It is THE BEST sparse FFT around!!! If you're looking for AAFFT, try this out first. 2.) AAFFT, implemented by Mark Iwen in 2008. This code is easy to use, and documented well, but not implemented...
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  • 21
    A reworking in C++ of KBMAG. A package and C++ library for computing automatic structures and confluent rewriting system for group and coset rewriting systems, and for computing with finite state automata
    Downloads: 1 This Week
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  • 22

    erf

    error function and related functions in pure standard Fortran 2008

    Fortran 2008 added 3 new intrinsic functions: erf, erfc, erfc_scaled. However, they take only real arguments. This package provides a BSD licensed Fortran 2008 module with erf(z), where z is a complex argument. The calculation is based on calculating w(z), the Faddeyeva (plasma dispersion) function. Two algorithms are implemented: TOMS 680 and 916, http://www.netlib.org/toms/. The simple test program calculates values in the Abramowitz, Stegun.
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  • 23
    Opt4J

    Opt4J

    Modular Java framework for meta-heuristic optimization

    Opt4J is an open source Java-based framework for evolutionary computation. It contains a set of (multi-objective) optimization algorithms such as evolutionary algorithms (including SPEA2 and NSGA2), differential evolution, particle swarm optimization, and simulated annealing. The benchmarks that are included comprise ZDT, DTLZ, WFG, and the knapsack problem. The goal of Opt4J is to simplify the evolutionary optimization of user-defined problems as well as the implementation of arbitrary...
    Downloads: 1 This Week
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  • 24

    Corbata

    CORe microBiome Analysis Tools

    Corbata is a set of statistical tools that can be used to analyze the core microbiome across a set of samples.
    Downloads: 0 This Week
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  • 25
    Print the English name of a number of any size. Number can be run on the command line, or as a CGI script. Number prints names in both the American and European naming system. Number can also print the decimal expansion of a number.
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