Showing 26 open source projects for "bayesian"

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  • 1
    PyMC

    PyMC

    Bayesian Modeling and Probabilistic Programming in Python

    PyMC is a Python library for probabilistic programming focused on Bayesian statistical modeling and machine learning. Built on top of computational tools like Aesara and NumPy, PyMC allows users to define models using intuitive syntax and perform inference using MCMC, variational inference, and other advanced algorithms. It’s widely used in scientific research, data science, and decision modeling.
    Downloads: 0 This Week
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  • 2
    CausalImpact

    CausalImpact

    An R package for causal inference in time series

    ...It uses Bayesian modeling to fit a structural time series to the pre-period and extrapolate a counterfactual prediction for the post period, then compares observed vs predicted to infer the causal effect. The package supports plotting, summary tables, and verbal narratives for interpretive reports.
    Downloads: 0 This Week
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  • 3

    BACE for gretl

    Bayesian Averaging of Classical Estimates

    Bayesian Averaging of Classical Estimates package.
    Downloads: 1 This Week
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  • 4
    Bayes+Estimate is a Rust and C++ library that implement numerical algorithms for Bayesian estimation. They provide tested and consistent numerical methods and represents the wide variety of Bayesian estimation algorithms and system model.
    Downloads: 2 This Week
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  • 5
    UnBBayes

    UnBBayes

    Framework & GUI for Bayes Nets and other probabilistic models.

    UnBBayes is a probabilistic network framework written in Java. It has both a GUI and an API with inference, sampling, learning and evaluation. It supports Bayesian networks, influence diagrams, MSBN, OOBN, HBN, MEBN/PR-OWL, PRM, structure, parameter and incremental learning. Please, visit our wiki (https://sourceforge.net/p/unbbayes/wiki/Home/) for more information. Check out the license section (https://sourceforge.net/p/unbbayes/wiki/License/) for our licensing policy.
    Downloads: 2 This Week
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  • 6
    JAGS is Just Another Gibbs Sampler. It is a program for the statistical analysis of Bayesian hierarchical models by Markov Chain Monte Carlo.
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    Downloads: 1,283 This Week
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  • 7
    STK

    STK

    a Small (Matlab/Octave) Toolbox for Kriging

    ...Its primary focus in on the interpolation / regression technique known as kriging, which is very closely related to Splines and Radial Basis Functions, and can be interpreted as a non-parametric Bayesian method using a Gaussian Process (GP) prior. The STK also provides tools for the sequential and non-sequential design of experiments. Even though it is, currently, mostly geared towards the Design and Analysis of Computer Experiments (DACE), the STK can be useful for other applications areas (such as Geostatistics, Machine Learning, Non-parametric Regression, etc.).
    Downloads: 1 This Week
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  • 8
    R packages (maintained by YJLEE)

    R packages (maintained by YJLEE)

    R packages for PK/PD modeling , BE/BA, drug stability, ivivc, etc.

    These R packages are developed for data analysis of PK/PD modeling & simulation, bioequivalence/bioavailability (BE/BA), drug stability, in-vitro and in-vivo correlation (ivivc), as well as therapeutic drug monitoring (TDM).
    Downloads: 2 This Week
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  • 9
    rethinking

    rethinking

    Statistical Rethinking course and book package

    This R package accompanies Richard McElreath’s Statistical Rethinking (2nd edition), offering utilities to fit and compare Bayesian models using both MAP estimation (quap) and Hamiltonian Monte Carlo via RStan (ulam). It supports specifying models via explicit distributional assumptions, providing flexibility for advanced statistical workflows.
    Downloads: 0 This Week
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  • 10
    The Java Data Mining Package (JDMP) is a library that provides methods for analyzing data with the help of machine learning algorithms (e.g. clustering, classification, graphical models, neural networks, Bayesian networks, text processing, optimization).
    Downloads: 0 This Week
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  • 11

    BiomeNet

    BAYESIAN INFERENCE OF METABOLIC DIVERGENCE AMONG MICROBIAL COMMUNITIES

    ...Using such data to infer community-level metabolic divergence is hindered by the lack of a suitable statistical framework. Here, we describe a novel hierarchical Bayesian model, called BiomeNet (Bayesian inference of metabolic networks), for inferring differential prevalence of metabolic networks among microbial communities. To infer the structure of community-level metabolic interactions, BiomeNet applies a mixed-membership modelling framework to enzyme abundance information. The basic idea is that the mixture components of the model (metabolic reactions, subnetworks, and networks) are shared across all groups (microbiome samples), but the mixture proportions vary from group to group. ...
    Downloads: 0 This Week
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  • 12
    phcfM

    phcfM

    R package for modelling anthropogenic deforestation

    ...It was named after the REDD+ pilot-project 'programme holistique de conservation des forêts à Madagascar'. phcfM includes two main functions: (i) demography(), to model the population growth with time in a hierarchical Bayesian framework using population census data and Gaussian linear mixed models and (ii) deforestation(), to model the deforestation process in a hierarchical Bayesian framework using land-cover change data and Binomial logistic regression models with variable time-intervals between land-cover observations. The two functions use embedded Gibbs samplers written in C++ with the Scythe statistical library to reduce computational time.
    Downloads: 0 This Week
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  • 13
    fesslix

    fesslix

    Stochastic Analysis

    A brief summary of the main features of Fesslix: - Perform non-intrusive reliability analysis or Bayesian updating either --- by running commands on the command line or --- by means of an Octave interface or --- by means of a Python interface - Flexible input language for writing Fesslix parameter files --- Control flow statements (e.g. if, for, while) --- Most parameters can be defined as functions - Working with response surfaces - Linear finite element analysis using truss, beam and plane stress/strain elements - Spectral Stochastic Finite Elements - Bayesian networks This is the download page for Windows executables of Fesslix.
    Downloads: 0 This Week
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  • 14

    abc-sde

    approximate Bayesian computation for stochastic differential equations

    A MATLAB toolbox for approximate Bayesian computation (ABC) in stochastic differential equation models. It performs approximate Bayesian computation for stochastic models having latent dynamics defined by stochastic differential equations (SDEs) and not limited to the "state-space" modelling framework. Both one- and multi-dimensional SDE systems are supported and partially observed systems are easily accommodated.
    Downloads: 0 This Week
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  • 15
    Bayesian Network tools in Java (BNJ) is an open-source suite of software tools for research and development using graphical models of probability. It is published by the Kansas State University Laboratory for Knowledge Discovery in Databases (KDD).
    Downloads: 0 This Week
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  • 16
    Provide a reference implementation of Moving Taylor Bayesian Regression, a method for nonparametric multi-dimensional function estimation with correlated errors from finite samples, as a Python package based on SciPy
    Downloads: 0 This Week
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  • 17
    The Automated Parameter Estimation and Model Selection Toolkit is a fast, parallelized MCMC engine written in C for Bayesian inference (parameter estimation and model selection).
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  • 18
    Open Bayes is a python free/open library that allows users to easily create a bayesian network and perform inference/learning on it. It is mainly inspired from the Bayes Net Toolbox (BNT) but uses python as a base language. www.openbayes.org
    Downloads: 0 This Week
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  • 19
    JBendge - Bayesian Estimation of Nonlinear Dynamic General Equilibrium Models. The project provides a toolkit together with a graphical user interface for the specification, solution, estimation and simulation of models.
    Downloads: 0 This Week
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  • 20
    Bayesian Surprise Matlab toolkit is a basic toolkit for computing Bayesian surprise values given a large set of input samples. It is also useful as way of exploring surprise theory. For more information see also: http://ilab.usc.edu/
    Downloads: 0 This Week
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  • 21
    software for identifying modules in networks (e.g. "community detection"), as described in "a bayesian approach to network modularity" (physical review letters 100, 258701 (2008); http://link.aps.org/abstract/PRL/v100/e258701).
    Downloads: 0 This Week
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  • 22
    A C++ library for Bayesian computation, including a collection of more generally-applicable utilities.
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  • 23
    This is a Python package for general Bayesian inference.
    Downloads: 0 This Week
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  • 24
    Java/XML toolkit for research using Bayesian networks and other graphical models of probability (exact and approximate inference, structure learning, etc.)
    Downloads: 0 This Week
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  • 25

    RISO: distributed belief networks

    Distributed, heterogeneous Bayesian belief networks

    RISO: distributed, heterogeneous Bayesian belief networks. Belief network: a probability model defined on an acyclic directed graph; distributed: nodes can be on different hosts; and heterogeneous: allowing different types of conditional distributions.
    Downloads: 0 This Week
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