Showing 342 open source projects for "using"

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  • 1

    DyMMM

    Dynamic Multispecies Metabolic Modeling framework

    ...Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments. The ISME journal. Zhuang, K., Ma, E., Lovley, D. R., & Mahadevan, R. (2012). The design of long-term effective uranium bioremediation strategy using a community metabolic model. Biotechnology and Bioengineering.
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  • 2
    A module containing python wrappers for the SUite of Non-linear DIfferential/ALgebraic Solvers (SUNDIALS), using ctypes.
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  • 3
    RVASSOC is a simple program for performing various tests for association between genotypes and disease status using sequence variants from unrelated cases and controls. It was designed to accommodate both rare variants and missing genotypes.
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  • 4
    This App solves a system of simultaneous equations (liner or nonlinear) by using a matrix root solver. Iterations and solutions are provided by GSL (GNU science library).
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  • Atera all-in-one platform IT management software with AI agents Icon
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  • 5

    Bouc-Wen-Baber-Noori model of hysteresis

    Compute parameters of the Bouc-Wen-Baber-Noori model of hysteresis

    ...Journal IEEE Transactions on Evolutionary Computation (IEEE-TEC). 2002. Vol. 6. No. 2. pp. 182-197. - Gilberto A. Ortiz, Diego A. Alvarez, Daniel Bedoya-Ruiz. "Identification of Bouc-Wen type models using multi-objective optimization algorithms". Computers & Structures. Vol. 114-115. pp. 121-132. 2013.
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  • 6
    This utility, lingen, implements evolution of native machine code via linear genetic programming. The assembly level code uses a subset of assembly language which manipulates and performs calculations using the floating point unit (FPU) of the CPU.
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  • 7

    Kiel University Relation package

    Fast C library for relation algebra using binary decision diagrams.

    Kure is a C library which provides manipulation of relations and operations of relation algebra using a fast implementation using binary decision diagram. It provides a Lua based domain-specific embedded programming language to conveniently manipulate and work with relations. For instance, given relations R, S, the tupling of them can be computed using [R,S] and they can be composed using R*S.
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  • 8
    Smart Calculator is beautifully designed, having both standard and scientific modes of calculations. It is built to run anywhere, as its written completely in Java. It featured different types of Look and Feels, using Java's Swing PLAF library.
    Downloads: 1 This Week
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  • 9
    Statistical models with python using numpy and scipy. Currently covers linear regression (with ordinary, generalized and weighted least squares), robust linear regression, and generalized linear model, discrete models, time series analysis and other statistical methods.
    Downloads: 11 This Week
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  • 10
    PyPedal is a Python module that provides tools for the manipulation of pedigrees, simple visualization of pedigrees, and the calculation of measures of genetic diversity from pedigrees.
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  • 11
    OptLib

    OptLib

    C nonlinear optimization library

    [PROJECT MIGRATED TO GIT-HUB] OptLib is a library of nonlinear optimization routines focused on the use of stochastic methods, including Simulated Annealing, Genetic Algorithms, and Monte Carlo. Routines are parallelized using MPI.
    Downloads: 0 This Week
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  • 12
    GLUT Complex Function Plotter

    GLUT Complex Function Plotter

    GCFP is an open-source tool for visualizing complex functions.

    GLUT Complex Function Plotter (GCFP) is an open-source tool for visualizing complex functions using OpenGL. It can be customized using LUA. Please note: I wrote GCFP while learning for an exam in complex analysis to understand the behavior of some complex functions. As it has proven useful to me I thought I would share it though obviously GCFP could be improved in many ways..
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  • 13

    ViennaFEM

    A finite element solver using state-of-the-art programming techniques.

    ViennaFEM is a library-centric implementation of the finite element method in C++. It features a symbolic math kernel, which manipulates the strong or weak form of the problem and automatically derives the discrete form. ViennaFEM is built on top of the following libraries: ViennaMath provides the symbolic math kernel, ViennaGrid (with ViennaData) allows for a generic grid handling and quantity storage, while ViennaCL provides the linear solvers and GPU acceleration.
    Downloads: 0 This Week
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  • 14

    The SNOMP Library

    SNOMP (SNOMP is Not OpenMP) is a library for semi-shared memory parall

    SNOMP (SNOMP is Not OpenMP) is a library for semi-shared memory parallelization.
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  • 15

    Set Theory Relations in Java

    Java classes implementing set theory relation concepts

    ...The classes enable some ordered pairs to be stated, and will deduce all the other related ordered pairs implied by the relation's properties. There are implementations of transitive, reflexive-and-transitive, and symmetric-reflexive-and-transitive (equivalence) relations using hash sets and tree sets. The current version (0.1) has been tested but not substantially used. Feedback from use in the field will be welcomed, as will offers of collaboration to improve the deduction algorithms.
    Downloads: 0 This Week
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  • 16
    Gavrog stands for "Generation, Analysis and Visualization of Reticular Ornaments using Gavrog". It is a Java library together with a suite of interactive applications for the study of periodic net-like structures in space and their applications.
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  • 17
    DIFFR is a menu-driven graphical software whereby the problem of a plane wave diffraction on a rough surface can be solved using several numerical and approximate methods.
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  • 18
    MESH is a tool that measures distortion between two discrete surfaces (triangular meshes) using the Hausdorff distance to compute a maximum, mean and root-mean-square errors between two given surfaces. It also displays the error values on the surface.
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  • 19
    Console based notepad number cruncher makes calculations fast and simple, yet with ample features under the hood. With log turned on, you can record your session on-the-fly from any open instance of the program.
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  • 20
    Matrex is a lightweight vectorial spreadsheet: calculates blocks of values, not single cells; it is strongly multithreaded; users can work together on sheets using a server. Adapters to matlab, scilab, octave, R.
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  • 21
    Chess Queens
    Calculate the number of solutions to place n queens on an n*n chess board, without any queen attacking each other. Options allow using rooks instead of queens, disabling knight attacks and setting the minimum distance between queens.
    Downloads: 1 This Week
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  • 22

    Vector and Matrix Math Library

    Obsolete: use https://github.com/VMML/vmmlib

    VMMLib is a vector and matrix math library implemented using C++ templates, thus making it very easy to integrate into other libraries and programs. It is developed at the VMML, University of Zürich.
    Downloads: 0 This Week
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  • 23
    Geometry Solver 3D

    Geometry Solver 3D

    An application for analytic geometry education

    This tool is supposed to be able to calculate majority of basic problems of analytic geometry lessons at secondary schools. Calculations are done using a comprendious user interface and results are shown in well-organized tables as well as drawn into a 3D window. We took special care to integrate full support for interactive whiteboards reducing the need for using keyboard to minimum. We used different colors for every object to help users learn the user interface quickly.
    Downloads: 4 This Week
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  • 24
    Python binding for GNU Scientific Library using Cython for NumPy users.
    Downloads: 0 This Week
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  • 25
    Multiprecision complex matrix and mathematics (using gmp and mpfr modules) and plotting (using OpenGL graphics). There are file I&O functions.
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