Showing 356 open source projects for "command line"

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  • 1
    GluCat: Clifford algebra templates

    GluCat: Clifford algebra templates

    Calculation with Clifford algebras: C++ library and Python module

    GluCat is a generic library of C++ templates that implement universal Clifford algebras over the field of real numbers. The PyClical extension module for Python gives users an easy Python scripting interface for calculations in Clifford algebras. The name PyClical is an homage to Pertti Lounesto's CLICAL.
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  • 2

    sequoia-dap

    SEQUOIA ocean data assimilation platform (a SIROCCO suite tool)

    ***** THIS PROJECT HAS MOVED TO https://gitlab.in2p3.fr/sirocco/sdap/sdap-dev ***** ***** THIS PROJECT HAS MOVED TO https://gitlab.in2p3.fr/sirocco/sdap/sdap-dev ***** ***** THIS PROJECT HAS MOVED TO https://gitlab.in2p3.fr/sirocco/sdap/sdap-dev ***** Within the SIROCCO suite of numerical tools, the purpose of SDAP is to provide a flexible platform to carry out multivariate assimilation of geophysical data in a numerical model. The program is multi-grid (finite differences or finite...
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  • 3
    NZMATH

    NZMATH

    Python Calculator on Number Theory, three-birds-one learning material

    ...It is freely available and distributed under the BSD license. All programs are written only by Python so that you can easily see their algorithmic number theory. You can get NZMATH with a single command: % python -m pip install -U nzmath Here % is the command line prompt of Windows or Unix/macOS. This release contains several program corrections and additions obtained by writing a programming "notebook" of the book 'Lectures on Elementary Number Theory' (TAKAGI, Teiji) in Python-NZMATH language. The "notebook" is available together. ...
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  • 4

    mers

    Portable software and data related to Mersenne numbers

    Portable software related to Mersenne numbers. Useful to automate certain tasks related to GIMPS (www.mersenne.org) for computers that cannot run the GIMPS software for whatever reason. Much of the code has been in use since 1990 or so by a few people. The project web site at https://mers.sourceforge.io/mersenne.html has data about Mersenne numbers from many people generated by this and other software, notably from the GIMPS project.
    Downloads: 3 This Week
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  • 5
    Java multiprecision calculator

    Java multiprecision calculator

    Multiprecision calculator

    Multipresicion calculator, based on Bigdecimal Java class . It has a library (BigMath) that makes calculations with Bigdecimal. It has also an expression parser to parse the user input. It allows you to store user defined variables and functions . You can operate with them to be used for calculations or for creating new functions with composition. With the new version, you can also calculate the derivative of a function. JDK-17 compatibility You can find more about it at this web...
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  • 6
    General Number Field Sieve implementation
    Downloads: 2 This Week
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  • 7

    ntx

    Neutrality tests using the SNP site frequency spectrum

    Tests on "neutrality" are designed to detect systematic deviations from chance patterns in genetic data. This tool computes for a given SNP site frequency spectrum some standard test statistics like Tajima's D, Fay & Wu's H, etc. Additionally, the user may adapt the tests to specific demographies by specifying non-standard first and secondary moments. These can be obtained e.g. from simulations.
    Downloads: 1 This Week
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  • 8
    The LaTeX Equation Compiler is a preprocessor for LaTeX files that enables numeric and symbolic calculations. It reads equations specified by special keywords in the LaTeX file, manipulates them and calculates numeric values of variables. If your OS can install .deb packages, have a look at my PPA http://launchpad.net/~jrheinlaender/+archive/ppa
    Downloads: 0 This Week
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  • 9
    This software solves the Phylogeny problem using Median Networks. Exact and heuristic methods available. Input: an alignment and a reversible stepmatrix, output: (sub)optimal trees and their combinations. Steiner problem solver included.
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  • 10

    polynomial-roots-calculation

    Application for calculating the real roots of a polynomial

    Application for polynomial roots calculation. The application does the job by supposing the roots of the derivative function are known. This way, we can delimit the range where each possible root is in, and by applying Bolzano's theorem, we can find the zeroes. It is not a very eficient way, as we must calculate al the derivatives of the polinomial, implying very high numbers (n!), that make the needed precision increase, making the computational complexity for high-degree polinomials...
    Downloads: 0 This Week
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  • 11
    Deal with the apparent contour of a regular 3D surface, i.e. the observer view of the points of the surface in which the normal is orthogonal with the view direction
    Downloads: 0 This Week
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  • 12

    SHA256-in-C

    SHA-256 Algorithm Implementation in C

    Downloads: 6 This Week
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  • 13

    SidClock

    *nix Sidereal Clock

    *nix Sidereal Clock Application
    Downloads: 0 This Week
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  • 14

    opbdp

    opbdp (non-linear) pseudo-Boolean optimization

    opbdp is an implementation in C++ of an implicit enumeration algorithm for solving (non)linear 0-1 (or pseudo-Boolean) optimization problems with integer coefficients. A research report describing the techniques used in opbdp is included.
    Downloads: 0 This Week
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  • 15

    GenReg

    Generation of regular graphs

    Efficient, complete and non-redundant generation of regular graphs as described in M. Meringer: Fast Generation of Regular Graphs and Construction of Cages. Journal of Graph Theory 30, 137-146, 1999.
    Downloads: 4 This Week
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  • 16

    ADaMSoft

    Open Source and data mining software

    ADaMSoft is a free and Open Source Data Mining software developed in Java. It contains data management methods and it can create ready to use reports. It can read data from several sources and it can write the results in different formats.
    Downloads: 1 This Week
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  • 17

    yafu

    Automated integer factorization

    ...Most algorithm implementations are multi-threaded, allowing YAFU to fully utilize multi- or many-core processors (including SNFS, GNFS, SIQS, and ECM). YAFU is primarily a command-line driven tool. You provide the number to factor and, via screen output and log files, YAFU will provide you the factors. There is also an interactive environment similar to MATLAB or PARI/GP, where you can type commands and store results. YAFU is very customizable, through the optional use of many many command line parameters and a very capable expression inter
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    Downloads: 102 This Week
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  • 18

    proof-logic

    Proof Logic : A logical framework for theorem proving

    Proof Logic is a functional and equational logical framework for theorem proving based on Combinatory Logic and Lambda Calculus, whose expressions are both terms and proofs proving the equality between two terms.
    Downloads: 0 This Week
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  • 19
    statTools

    statTools

    Command-line tools for simple statistics

    statTools contains command-line tools for simple statistics
    Downloads: 0 This Week
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  • 20

    ExRandom

    Sampling exactly from the normal and exponential distributions

    ExRandom is a small header-only C++11 library for exact sampling from the normal, exponential, and discrete normal distributions (provided that the underlying generator is perfect). This library provides an implementation of the algorithms described in C. F. F. Karney, Sampling exactly from the normal distribution, ACM Trans. Math. Software 42(1), 3:1-14 (Jan. 2016), https://doi.org/10.1145/2710016, https://arxiv.org/abs/1303.6257.
    Downloads: 7 This Week
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  • 21
    Programmer's library for random numbers. Also random number generator testing code. Intended for simulation, games and "Monte-Carlo" algorithms.
    Downloads: 1 This Week
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  • 22
    gsasnp2

    gsasnp2

    PubMed ID: 29562348 / DOI: 10.1093/nar/gky175

    * GSA-SNP2 is a successor of GSA-SNP (Nam et al. 2010, NAR web server issue). GSA-SNP2 accepts human GWAS summary data (rs numbers, p-values) or gene-wise p-values and outputs pathway genesets ‘enriched’ with genes associated with the given phenotype. It also provides both local and global protein interaction networks in the associated pathways. * Article: SYoon, HCTNguyen, YJYoo, JKim, BBaik, SKim, JKim, SKim, DNam, "Efficient pathway enrichment and network analysis of GWAS summary data...
    Downloads: 1 This Week
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  • 23
    APBS

    APBS

    Biomolecular electrostatics software

    This software has moved to http://www.poissonboltzmann.org/.
    Downloads: 0 This Week
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  • 24
    PlanetPack

    PlanetPack

    Radial-velocity & transits analysis tool for exoplanets

    PlanetPack is a software tool developed to facilitate the radial-velocity time-series analysis for the goal of exoplanets detection, characterization, and basic dynamical simulations. The description of the main theoretic concepts, statistical methods and algorithms that PlanetPack implements, is given in the following refereed papers: R.V. Baluev 2013, Astronomy & Computing, V. 2, P. 18 (initial release); R.V. Baluev 2018, Astronomy & Computing, V. 25, P. 221 (update 3.0). The...
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  • 25
    Generic predictor that not depends data itself, this assumes original data is in L2(R) and there exists sampling theorem.
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