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HcryptoJ (Historical cryptology in Java) is a Java based programming library for implementing and analyzing historical ciphers. HcryptoJ is designed to support research and teaching in historical cryptography and computer science. Licensed under GPL.
Ganzúa is a cryptanalysis tool for classical ciphers (mono and polyalphabetic) that lets the user define almost completely arbitrary cipher and plain alphabets, allowing for the proper cryptanalysis of cryptograms obtained from non-English texts.