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This software computes likelihoods for infinitely-many-sites sequence data under multiple merger coalescents. The likelihood can be computed exactly or approximated via importance sampling.
Adaptive Wavelet Applications on general domains - the goal still far away. But the first step is done. This project aims at introducing wavelet methods realized in C++. As building block it uses FLENS.
My personal computing suite provides some programs I developed as a hobbyist and currently include a lambda calculus interpreter and a calculator which solves arithmetic expressions; both are written in C++.
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BIL++ is a set of standalone C++ packages for data processing in Bioinformatics (Graph mining, Bayesian networks, Genetic algorithm, Discretization, Gene expression data analysis, Hypothesis testing).
This is a program for numerical solution of Euler equations of compressible flows using discontinuous galerkin method. The code is written on top of the deal.II finite element library.
Code has been moved to
https://github.com/cpraveen/dflo
Torch5 provides a matlab-like environment for state-of-the-art machine learning algorithms. It is easy to use and provides a very efficient implementation, thanks to a easy and fast scripting language (Lua) and a underlying C++ implementation.
A simple program that solves linear equation systems. As of now only numerical coefficients are supported. The program is very simple and not suited for big matrices, since it uses laplace's method.
A strong, yet minimalistic Math-oriented Programming Language (MML) providing an easy-to-use console and a command-line script interpreter, targetted towards fast calculations for extremely big numbers, and bundled with a number of math libraries.
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A branch-and-prune method to find all solutions to systems of nonlinear equations. The number of variables must equal the number of equations. The variables must have proper lower and upper bounds. The solver has an interface to the AMPL environment.
Computes the characters of some Demazure modules of sl2^. Namely, consider the Weyl group element w_N = ... s_0 s_1 s_0 with a total of N factors. Then we can compute the character of the Demazure module V_{w_N}(m Lambda_0).
EngLab is a cross-compile mathematical platform with a C like syntax to be used by both engineers and users with small programming knowledge. It also enables the user and community to easily compile their own functions as shared objects.
Guanxi is a robust analysis and simulation application for Social Network Analysts. Guanxi allows researchers in the field to create, import, and export an endless array of networks, analyze their structure, and run custom dynamics over them.
Ein Projekt zur mathematischen Betrachtung moderner kryptographischen Verfahren und von Laplaceschen Fraktalen mit Fraktionellen Ableitungen. Das Projekt ist für die Forschung und nicht für kommerziellen Einsatz gedacht.
Software to cluster protein sequences into functionally similar groups. Journal reference: http://bioinformatics.oxfordjournals.org/cgi/content/short/24/16/1765
Snap (snap-pari) is a computer program for studying arithmetic invariants of hyperbolic 3-manifolds. See: Computing arithmetic invariants of 3-manifolds by Coulson, Goodman, Hodgson and Neumann, Experimental Mathematics Vol.9 (2000) 1.
Kicksey-winsey is an open source package for spectral fluid flow simulation using wavelets. It is provided as is and without any warranty that the results of the computations will be correct. Feedback on the forums would be very welcome !!
Expression Solver computes the value of a mathematical equation/expression. Works with operators, numbers, variables, and functions. Users can define their own variables and functions. hosted: http://github.com/matcatc/Expression-Solver