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G.A.V. (Graph Algorithm Visualizer) is a tool that visualizes algorithms from graph theory. A step-by-step visualization from each different algorithm allows the user to understand the particular algorithm very easily.
GrALoG is a tool for editing and visualising graph-like-structures and the results of algorithms running on them. Through it's plugins GrALoG is hugely extendable, i.e. plugin-developers can define their own graph-like structures and algorithms.
A minimalistic CASE tool that will allow end-users to analyze their graphs (plain-old graphs, UML diagrams, ERDs, etc.) by applying various graph theory functions to them (such as a shortest path algorithm or a spanning tree algorithm.)