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Yagy is a (yetanother) Graphical user interface for Yacas, a (yetanother) Computer Algebra System.
NOTE: Yacas and yagy development has moved to github. The new repositories are located at https://github.com/grzegorzmazur/yacas and https://github.com/grzegorzmazur/yagy . The mailing list has been moved over to https://groups.google.com/forum/#!
Yetanother library of convex optimization routines; this one works with the GNU scientific library. Focuses on interior point methods for linear programming, second order cone programing and semidefinite programming
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yades - "yetanother differential equation solver". This Java application solves ordinary differential equations (ODE) numerically and displays the results as tables, graphs, direction fields or vector fields.
YAMM is a scientific calculator which supports the MATLAB-like programming language. Do not like resource-consuming MATLAB, this software provides a lightweight but efficient environment.
Fractical is a fractal program, currently able to draw the mandelbrot and julia sets. I will hopefully be able to add more soon.
It's written in c++, using the wxwindows gui toolkit, which is available at www.wxwindows.org.
Glucas is a client to make primality test for Mersenne numbers. It is related to GIMPS effort to search the bigest primes ever found. In addition, it can be used as an excellent performance test. Posix thread, OpenMP and SunMP compatible