Showing 32 open source projects for "d-apt"

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  • 1

    rw

    rw calculates rank-width and rank-decompositions.

    ...It is based on ideas from "Computing rank-width exactly" by Sang-il Oum, "Sopra una formula numerica" by Ernesto Pascal, "Generation of a Vector from the Lexicographical Index" by B.P. Buckles and M. Lybanon and "Fast additions on masked integers" by Michael D. Adams and David S. Wise. On 2009's computers it works quite well up to graph sizes of about 28 nodes. Runtime and memory usage are exponential in the graph size.
    Downloads: 86 This Week
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  • 2
    Social Network Visualizer

    Social Network Visualizer

    Social Network Analysis and Visualization software

    Visit our new site: http://socnetv.org Social Network Visualizer (SocNetV) is a social network analysis and visualization application. You can draw a social network (graph/digraph) or load an existing one (GraphML, UCINET, Pajek, etc), compute cohesion, centrality, community and structural equivalence metrics and apply various layout algorithms based on actor centrality or prestige scores (i.e. Eigenvector, Betweenness) or on dynamic models (i.e. Kamada-Kawai spring-embedder)
    Downloads: 5 This Week
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  • 3
    Entity-To-Code

    Entity-To-Code

    Mathematical Functions in an NPM library made with JS and C++

    NPM URL: https://www.npmjs.com/package/entitytocode Source Forge: https://entity-to-code.sourceforge.io WIKI Git: https://github.com/BSW-G-D-iph6/Entity-To-Code/wiki
    Downloads: 0 This Week
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  • 4

    Book-Reviews-In-Mathematica

    Partial Differential Equations, Complex Analysis, Mathematica, Farlow

    Cliff* Notes, Mathematica Evaluatable "Partial Differential Equations for Scientists and Engineers", Farlow "Physics for Scientists and Engineers", Serway "A First Course in Complex Analysis", Beck "PDE", Asmar "PDE, An Introduction", Colton "Elementary Differential Equations", 7th, Rainville "Ordinary Differential Equations", Tenenbaum "Linear Algebra And It's Applications", Lay "Swokowski Calculus", 5th, Swokowski "Chemistry Concepts & Problems, A Self-Teaching Guide",...
    Downloads: 1 This Week
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  • 5

    ntx

    Neutrality tests using the SNP site frequency spectrum

    Tests on "neutrality" are designed to detect systematic deviations from chance patterns in genetic data. This tool computes for a given SNP site frequency spectrum some standard test statistics like Tajima's D, Fay & Wu's H, etc. Additionally, the user may adapt the tests to specific demographies by specifying non-standard first and secondary moments. These can be obtained e.g. from simulations.
    Downloads: 0 This Week
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  • 6
    gsasnp2

    gsasnp2

    PubMed ID: 29562348 / DOI: 10.1093/nar/gky175

    ...LINUX, MAC OR WINDOWS SPECIFIED FOLDER) TO ALLOW THE PROGRAM TO FIND THE PREDESIGNED DATA. * UPDATE NOTE: -> Sep-1-2020: add an update for Ubuntu-20.04. You will need Boost library installed (sudo apt-get install libboost-all-dev) -> Mar-7-2018: revise header terms in the output file
    Downloads: 0 This Week
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  • 7

    octave-intinf

    Infinite-precision integer arithmetic for Octave, written in Octave

    ...The supported operations are: >> s = a = intinf (126) % Creation of intinf-class object from integer or string >> b = intinf ('-792716404922304611755050042308687') >> c = a + b % Addition >> d = a - b % Subtraction >> e = c * d % Multiplication >> f = (e - a^2) / b % Exponentiation, division >> f == -b % Logical operators >> [q, r] = intinf_divide (b^2, a) % Divsion and remainder >> x = intinf_rand (100) % Random number (here, with 100 digits) TODO: * Better errors...
    Downloads: 0 This Week
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  • 8
    BioFVM

    BioFVM

    3-D diffusion solver for biological problems

    BioFVM is an open source diffusive transport solver for biological problems. It can solve for the diffusion of tens or hundreds of substrates on large 3-D domains. For simplicity, the code has minimal external dependencies. BioFVM was first published in: A. Ghaffarizadeh, S.H. Friedman, and P. Macklin. BioFVM: an efficient, parallelized diffusive transport solver for 3-D biological simulations. Bioinformatics 32(8): 1156-8, 2016. DOI: 10.1093/bioinformatics/btv730 method paper: http://dx.doi.org/10.1093/bioinformatics/btv730
    Downloads: 5 This Week
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  • 9

    GPMfit

    Gaussian Process Model Fitting

    Gaussian Process model for fitting deterministic simulator output. Establish efficient and reliable likelihood optimization through hybridized DIRECT-BFGS and multi-start BFGS algorithms. Programming Language: Matlab.
    Downloads: 0 This Week
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  • 10
    pure python polyfit

    pure python polyfit

    python2/3: compute polyfit (1D, 2D, N-D) without thirdparty libraries

    python2/3: compute polyfit (1D, 2D, N-D) without any thirdparty library like numpy, scipy etc. also can be used for least squares solution computation and for A=QR matrix decomposition. Tested with python 2.7 and 3.4 Consider donating to this project: https://sourceforge.net/p/purepythonpolyfit/donation For a Sample use, refer to the WIKI
    Downloads: 0 This Week
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  • 11
    MOEA Framework

    MOEA Framework

    A Free and Open Source Java Framework for Multiobjective Optimization

    ...The MOEA Framework supports genetic algorithms, differential evolution, particle swarm optimization, genetic programming, grammatical evolution, and more. A number of algorithms are provided out-of-the-box, including NSGA-II, NSGA-III, ε-MOEA, GDE3 and MOEA/D. In addition, the MOEA Framework provides the tools necessary to rapidly design, develop, execute and statistically test optimization algorithms.
    Downloads: 0 This Week
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  • 12
    This project provides a Fortran90 library and a python module for singular spectrum analyses such as PCA/EOF or MSSA. It is intended for people interested, for example, in analysing climate or financial variability.
    Downloads: 0 This Week
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  • 13
    VectorAlgebra is a Mathematica-package which implements various functions for simple vector calculations in d-dimensional spaces with constant metrics.
    Downloads: 0 This Week
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  • 14
    Make It True

    Make It True

    Simple, effective algebra trainer

    ...Another approach would be to pick any number for c, then express d in terms of that number. For example, if the student arbitrarily chose c=13 then: 18-64-c*d=4 18-64-13*d=4 d=(4-18+64)/(-13)
    Downloads: 0 This Week
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  • 15

    Average

    Command-line calculator of basic statistics.

    ...Entry can by a text file (any column can be specified, default is the first) or directly in the terminal if Average is run without specifying a file -- in which case, input can be terminated by pressing Ctrl-D. It is possible to choose the output of a single statistic (just the value, no labels), instead of the fully detailed output (default).
    Downloads: 0 This Week
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  • 16

    ffdefluc

    a defluctuator for avisynth

    Downloads: 0 This Week
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  • 17
    Lego Charts for Excel

    Lego Charts for Excel

    Plot Excel data as photo-realistic 3D LEGO® models

    Using a sequence of Open Source CAD/CAM and graphics tools, integrated through Excel macro code, "Lego Charts" extends the idea of the Excel 3-D bar chart. It allows the placement, shapes and colours of the bars to represent further dimensions to the data. The chart is presented as a photo-realistic model apparently constructed out of LEGO® [1] bricks. The downloaded package consists of an Excel template to create the charts, an extensive installation and user guide, and two fully-worked samples. ...
    Downloads: 1 This Week
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  • 18

    DyMMM

    Dynamic Multispecies Metabolic Modeling framework

    ...The DyMMM framework was formerly known as the DMMM framework. Please use the following citation for bibliographical purposes: Zhuang, K., Izallalen, M., Mouser, P., Richter, H., Risso, C., Mahadevan, R., & Lovley, D. R. (2011). Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments. The ISME journal. Zhuang, K., Ma, E., Lovley, D. R., & Mahadevan, R. (2012). The design of long-term effective uranium bioremediation strategy using a community metabolic model. Biotechnology and Bioengineering.
    Downloads: 0 This Week
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  • 19
    A 2-D inviscid flow and adjoint solver on unstructured triangular grids. It makes use of a vertex-centroid finite volume scheme which is second order accurate. The adjoint solver is developed using the automatic differentiation tool called TAPENADE. Code has been moved to https://github.com/cpraveen/euler2d
    Downloads: 0 This Week
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  • 20
    This is a simple program that will factor a quadratic trinomial using both "guess-and-check" and the quadratic formula. You input a, b, and c, where ax^2+bx+c=0; you will get a result in the form of (ax+b)(cx+d)=0 and x=a or x=b.
    Downloads: 0 This Week
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  • 21
    This software is written in Fortran 90 and is related to forward and inverse problems for the Helmholtz equation in 2-D.
    Downloads: 0 This Week
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  • 22
    Let P be a 2D point expressed in a plane area defined by four 2D points A,B,C,D. The aim of our C++ class is to express the coordinates of P in order to match when A,B,C,D is rectified as a rectangle. A demo application shows the use of the C++ class.
    Downloads: 0 This Week
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  • 23
    OMG is an online 2-D Mesh Generator. Using Shewchuka Triangle (written in C) to generate DT and a Quadtree algorithm (written in php) to triangulate a PSLG. A few Import end Export functions are included. Using SVG to display meshes.
    Downloads: 0 This Week
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  • 24
    The project aims to provide the basic functions and algorithms needed for computations in polynomial rings over the ring of integers, including polynomial arithmetic and D-Groebner Bases. It might evolve in some kind of computer algebra system
    Downloads: 0 This Week
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  • 25
    D-Cog (Declarative-Cognition) is a Java based framework for training software components (reusable, object-oriented, interface-driven components). Instead of programmed, software components are trained by example to get the expected results.
    Downloads: 0 This Week
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