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...SAGA is programmed in the object oriented C++ language and supports the implementation of new functions with a very effective Application Programming Interface (API). Functions are organised as modules in framework independent Module Libraries and can be accessed via SAGA’s Graphical User Interface (GUI) or various scripting environments (shell scripts, Python, R, ...). Please provide the following reference in your work if you are using SAGA: Conrad, O., Bechtel, B., Bock, M., Dietrich, H., Fischer, E., Gerlitz, L., Wehberg, J., Wichmann, V., and Boehner, J. (2015): System for Automated Geoscientific Analyses (SAGA) v. 2.1.4. ...

GISBox by Citiviz is a ready-to-use virtual appliance containing an assortment of powerful, free and open source GIS, Data Mining and Analysis, Modelling and Programming software and packages. The pre-configured and tested GISBox allows you to try and use in few minutes a variety of software used by data scientists, engineers, physicists, mathematicians, geomatics engineers, and geographers from around the globe, without installing anything more than once the Oracle VirtualBox™ software...

GrassView is a wxPython GUI for GRASS, the GNU Geographical Information System.

...The C functions assume a particular format for the HDF5 file contents, and provide functions for reading and writing data to such files. There is also a Python API that provides a procedural as well as an object-oriented interface to these functions. A Python GUI for interacting with such datasets is also part of the project. While there are other open-source GIS, and image-processing packages available, this one is designed to be comprehensive, work on 3 major platforms, user-extensible, fast, and able to handle huge datasets. ...