Search Results for "squid-graph"
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Showing 43 open source projects for "squid-graph"
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DGL
Python package built to ease deep learning on graph
...We want to make it easy to implement graph neural networks model family. We also want to make the combination of graph based modules and tensor based modules (PyTorch or MXNet) as smooth as possible. DGL provides a powerful graph object that can reside on either CPU or GPU. It bundles structural data as well as features for a better control. We provide a variety of functions for computing with graph objects including efficient and customizable message passing primitives for Graph Neural Networks. -
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PyKEEN
A Python library for learning and evaluating knowledge graph embedding
PyKEEN (Python KnowlEdge EmbeddiNgs) is a Python package designed to train and evaluate knowledge graph embedding models (incorporating multi-modal information). PyKEEN is a Python package for reproducible, facile knowledge graph embeddings. PyKEEN has a function pykeen.env() that magically prints relevant version information about PyTorch, CUDA, and your operating system that can be used for debugging. If you’re in a Jupyter Notebook, it will be pretty-printed as an HTML table. -
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Materials Discovery: GNoME
AI discovers 520000 stable inorganic crystal structures for research
Materials Discovery (GNoME) is a large-scale research initiative by Google DeepMind focused on applying graph neural networks to accelerate the discovery of stable inorganic crystal materials. The project centers on Graph Networks for Materials Exploration (GNoME), a message-passing neural network architecture trained on density functional theory (DFT) data to predict material stability and energy formation. Using GNoME, DeepMind identified 381,000 new stable materials, later expanding the dataset to include over 520,000 materials within 1 meV/atom of the convex hull as of August 2024. ... -
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tf2onnx
Convert TensorFlow, Keras, Tensorflow.js and Tflite models to ONNX
...TensorFlow has many more ops than ONNX and occasionally mapping a model to ONNX creates issues. tf2onnx will use the ONNX version installed on your system and installs the latest ONNX version if none is found. We support and test ONNX opset-13 to opset-17. opset-6 to opset-12 should work but we don't test them. If you want the graph to be generated with a specific opset, use --opset in the command line, for example --opset 13. When running under tf-2.x tf2onnx will use the tensorflow V2 controlflow. -
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PyG
Graph Neural Network Library for PyTorch
PyG (PyTorch Geometric) is a library built upon PyTorch to easily write and train Graph Neural Networks (GNNs) for a wide range of applications related to structured data. It consists of various methods for deep learning on graphs and other irregular structures, also known as geometric deep learning, from a variety of published papers. In addition, it consists of easy-to-use mini-batch loaders for operating on many small and single giant graphs, multi GPU-support, DataPipe support, distributed graph learning via Quiver, a large number of common benchmark datasets (based on simple interfaces to create your own), the GraphGym experiment manager, and helpful transforms, both for learning on arbitrary graphs as well as on 3D meshes or point clouds. ... -
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PyTensor
Python library for defining and optimizing mathematical expressions
...PyTensor is based on Theano, which has been powering large-scale computationally intensive scientific investigations since 2007. A hackable, pure-Python codebase. Extensible graph framework is suitable for rapid development of custom operators and symbolic optimizations. Implements an extensible graph transpilation framework that currently provides compilation via C, JAX, and Numba. Based on one of the most widely-used Python tensor libraries: Theano. -
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PyTorch Geometric Temporal
Spatiotemporal Signal Processing with Neural Machine Learning Models
...The package interfaces well with Pytorch Lightning which allows training on CPUs, single and multiple GPUs out-of-the-box. PyTorch Geometric Temporal makes implementing Dynamic and Temporal Graph Neural Networks quite easy - see the accompanying tutorial. Head over to our documentation to find out more about installation, creation of datasets and a full list of implemented methods and available datasets. -
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Apache Hamilton
Helps data scientists define testable self-documenting dataflows
Apache Hamilton is an open-source Python framework designed to simplify the creation and management of dataflows used in analytics, machine learning pipelines, and data engineering workflows. The framework enables developers to define data transformations as simple Python functions, where each function represents a node in a dataflow graph and its parameters define dependencies on other nodes. Hamilton automatically analyzes these functions and constructs a directed acyclic graph representing the pipeline, allowing the system to execute transformations in the correct order. This approach encourages modular, testable, and maintainable data pipelines because each transformation is isolated and easily unit tested. ... -
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Koila
Prevent PyTorch's `CUDA error: out of memory` in just 1 line of code
...The library introduces a lazy evaluation mechanism that delays computation until it is actually required, allowing the framework to better estimate the memory requirements of a model before execution. By building a computational graph first and executing operations only when necessary, koila reduces the risk of running out of GPU memory during the forward pass of neural network training. This approach enables developers to experiment with larger batch sizes and more complex architectures while maintaining stable training behavior. The system acts as a thin wrapper around PyTorch tensors and operations, meaning that it integrates easily into existing PyTorch code without requiring major changes to model implementations. ... -
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TensorFlow
TensorFlow is an open source library for machine learning
...The platform can be easily deployed on multiple CPUs, GPUs and Google's proprietary chip, the tensor processing unit (TPU). TensorFlow expresses its computations as dataflow graphs, with each node in the graph representing an operation. Nodes take tensors—multidimensional arrays—as input and produce tensors as output. The framework allows for these algorithms to be run in C++ for better performance, while the multiple levels of APIs let the user determine how high or low they wish the level of abstraction to be in the models produced. ... -
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BentoML
Unified Model Serving Framework
...Parallelize compute-intense model inference workloads to scale separately from the serving logic. Adaptive batching dynamically groups inference requests for optimal performance. Orchestrate distributed inference graph with multiple models via Yatai on Kubernetes. Easily configure CUDA dependencies for running inference with GPU. Automatically generate docker images for production deployment. -
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DoWhy
DoWhy is a Python library for causal inference
...DoWhy provides a wide variety of algorithms for effect estimation, causal structure learning, diagnosis of causal structures, root cause analysis, interventions and counterfactuals. DoWhy builds on two of the most powerful frameworks for causal inference: graphical causal models and potential outcomes. For effect estimation, it uses graph-based criteria and do-calculus for modeling assumptions and identifying a non-parametric causal effect. For estimation, it switches to methods based primarily on potential outcomes. -
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Kubeflow pipelines
Machine Learning Pipelines for Kubeflow
Kubeflow is a machine learning (ML) toolkit that is dedicated to making deployments of ML workflows on Kubernetes simple, portable, and scalable. A pipeline is a description of an ML workflow, including all of the components in the workflow and how they combine in the form of a graph. The pipeline includes the definition of the inputs (parameters) required to run the pipeline and the inputs and outputs of each component. A pipeline component is a self-contained set of user code, packaged as a Docker image, that performs one step in the pipeline. For example, a component can be responsible for data preprocessing, data transformation, model training, and so on. -
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PyTorch Geometric
Geometric deep learning extension library for PyTorch
It consists of various methods for deep learning on graphs and other irregular structures, also known as geometric deep learning, from a variety of published papers. In addition, it consists of an easy-to-use mini-batch loader for many small and single giant graphs, a large number of common benchmark datasets (based on simple interfaces to create your own), and helpful transforms, both for learning on arbitrary graphs as well as on 3D meshes or point clouds. We have outsourced a lot of... -
15
Jittor
Jittor is a high-performance deep learning framework
...Jittor also contains a wealth of high-performance model libraries, including image recognition, detection, segmentation, generation, differentiable rendering, geometric learning, reinforcement learning, etc. The front-end language is Python. Module Design and Dynamic Graph Execution is used in the front-end, which is the most popular design for deep learning framework interface. The back-end is implemented by high-performance languages, such as CUDA, C++. Jittor'op is similar to NumPy. Let's try some operations. We create Var a and b via operation jt.float32, and add them. Printing those variables shows they have the same shape and dtype. -
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GNNPCSAFT
Smart Thermodynamic Modeling with Graph Neural Networks
The GNNPCSAFT app is an implementation of our project that focuses on using Graph Neural Networks (GNN) to estimate the pure-component parameters of the Equation of State PC-SAFT. We developed this app so the scientific community can access the model's results easily. In this app, the estimated pure-component parameters can be used to calculate thermodynamic properties and compare them with experimental data from the ThermoML Archive. -
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GNNPCSAFT Web App
Smart Thermodynamic Modeling with Graph Neural Networks
The GNNPCSAFT Web App is an implementation of our project that focuses on using Graph Neural Networks (GNN) to estimate the pure-component parameters of the Equation of State PC-SAFT. We developed this app so the scientific community can access the model's results easily. In this app, the estimated pure-component parameters can be used to calculate thermodynamic properties and compare them with experimental data from the ThermoML Archive. -
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AmpliGraph
Python library for Representation Learning on Knowledge Graphs
Open source library based on TensorFlow that predicts links between concepts in a knowledge graph. AmpliGraph is a suite of neural machine learning models for relational Learning, a branch of machine learning that deals with supervised learning on knowledge graphs. -
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PyTextRank
Python implementation of TextRank algorithms
PyTextRank is a Python implementation of TextRank as a spaCy pipeline extension, for graph-based natural language work -- and related knowledge graph practices. -
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DeepKE
An Open Toolkit for Knowledge Graph Extraction and Construction
Supporting cnSchema, standard supervised setting, low-resource setting, document-level setting and multi-modal setting for knowledge base population. DeepKE is a knowledge extraction toolkit supporting cnSchema, standard supervised, low-resource, and document-level scenarios for entity, relation, and attribution extraction. It allows developers and researchers to customize datasets and models to extract information from unstructured texts. DeepKE supports low-resource settings with only a... -
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Lightning Bolts
Toolbox of models, callbacks, and datasets for AI/ML researchers
Bolts package provides a variety of components to extend PyTorch Lightning, such as callbacks & datasets, for applied research and production. Torch ORT converts your model into an optimized ONNX graph, speeding up training & inference when using NVIDIA or AMD GPUs. We can introduce sparsity during fine-tuning with SparseML, which ultimately allows us to leverage the DeepSparse engine to see performance improvements at inference time. -
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Spektral
Graph Neural Networks with Keras and Tensorflow 2
Spektral is a Python library for graph deep learning, based on the Keras API and TensorFlow 2. The main goal of this project is to provide a simple but flexible framework for creating graph neural networks (GNNs). You can use Spektral for classifying the users of a social network, predicting molecular properties, generating new graphs with GANs, clustering nodes, predicting links, and any other task where data is described by graphs. -
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hloc
Visual localization made easy with hloc
...It implements Hierarchical Localization, leveraging image retrieval and feature matching, and is fast, accurate, and scalable. This codebase won the indoor/outdoor localization challenges at CVPR 2020 and ECCV 2020, in combination with SuperGlue, our graph neural network for feature matching. We provide step-by-step guides to localize with Aachen, InLoc, and to generate reference poses for your own data using SfM. Just download the datasets and you're reading to go! The notebook pipeline_InLoc.ipynb shows the steps for localizing with InLoc. It's much simpler since a 3D SfM model is not needed. ... -
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DIG
A library for graph deep learning research
The key difference with current graph deep learning libraries, such as PyTorch Geometric (PyG) and Deep Graph Library (DGL), is that, while PyG and DGL support basic graph deep learning operations, DIG provides a unified testbed for higher level, research-oriented graph deep learning tasks, such as graph generation, self-supervised learning, explainability, 3D graphs, and graph out-of-distribution. -
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OGB
Benchmark datasets, data loaders, and evaluators for graph machine
...We expect the benchmark datasets to evolve. OGB provides a diverse set of challenging and realistic benchmark datasets that are of varying sizes and cover a variety graph machine learning tasks, including prediction of node, link, and graph properties. OGB fully automates dataset processing. The OGB data loaders automatically download and process graphs, provide graph objects that are fully compatible with Pytorch Geometric and DGL. OGB provides standardized dataset splits and evaluators that allow for easy and reliable comparison of different models in a unified manner.
