Showing 33 open source projects for "sector"

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  • 1
    Armadillo

    Armadillo

    fast C++ library for linear algebra & scientific computing

    * Fast C++ library for linear algebra (matrix maths) and scientific computing * Easy to use functions and syntax, deliberately similar to Matlab / Octave * Uses template meta-programming techniques to increase efficiency * Provides user-friendly wrappers for OpenBLAS, Intel MKL, LAPACK, ATLAS, ARPACK, SuperLU and FFTW libraries * Useful for machine learning, pattern recognition, signal processing, bioinformatics, statistics, finance, etc. * Downloads:...
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    Downloads: 2,666 This Week
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  • 2
    CometAnalyser

    CometAnalyser

    CometAnalyser, for quantitative comet assay analysis.

    Description: Comet assay provides an easy solution to estimate DNA damage in single cells through microscopy assessment. To obtain reproducible and reliable quantitative data, we developed an easy-to-use tool named CometAnalyser. CometAnalyser is an open-source deep-learning tool designed for the analysis of both fluorescent and silver-stained wide-field microscopy images. Once the comets are segmented and classified, several intensity/morphological features are automatically exported as a...
    Downloads: 11 This Week
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  • 3
    Eventer

    Eventer

    Rapid, unbiased, reproducible analysis of synaptic events

    Eventer is a programme designed for the detection of spontaneous synaptic events measured by electrophysiology or imaging. The software combines deconvolution for detection, and variable length template matching approaches for screening out false positive events. Eventer also includes a machine learning-based approach allowing users to train a model to implement their ‘expert’ selection criteria across data sets without bias. Sharing models allows users to implement consistent analysis...
    Downloads: 11 This Week
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  • 4
    mTRF-Toolbox

    mTRF-Toolbox

    A MATLAB package for modelling multivariate stimulus-response data

    mTRF-Toolbox is a MATLAB package for modelling multivariate stimulus-response data, suitable for neurophysiological data such as MEG, EEG, sEEG, ECoG and EMG. It can be used to model the functional relationship between neuronal populations and dynamic sensory inputs such as natural scenes and sounds, or build neural decoders for reconstructing stimulus features and developing real-time applications such as brain-computer interfaces (BCIs). Toolbox Paper: ...
    Downloads: 3 This Week
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  • 5
    Spheroid_segmentation

    Spheroid_segmentation

    Deep learning networks for spheroid segmentation

    To accelerate the analysis of tumors' spheroids, different deep learning networks were trained to automatize the segmentation process. The code provides the trained networks based on Vgg16, Vgg19, ResNet18, and ResNet50 ready to be used for segmentation purposes. It also provides Matlab functions ready to be used to train new networks, segment new images, and measure the quality of the training using different quantitative parameters.
    Downloads: 0 This Week
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  • 6
    Phenalysis

    Phenalysis

    Analyze agronomic plant research plots in aerial orthomosaic images.

    A graphical user interface to import, analyze and export plots from orthomosaic images of agronomic trials. Please cite the following reference in your work if you use Phenalysis: Khan Z and Miklavcic SJ (2019) An Automatic Field Plot Extraction Method From Aerial Orthomosaic Images. Front. Plant Sci. 10:683. doi: https://doi.org/10.3389/fpls.2019.00683 This tool is being developed through the sponsorship of the Australian Research Council's Industrial Transformation Research Hub on...
    Downloads: 0 This Week
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  • 7
    Distance Scaling

    Distance Scaling

    A Distance Scaling Method to Improve Density-Based Clustering

    These functions implement a distance scaling method, proposed by Ye Zhu, Kai Ming Ting, and Maia Angelova, "A Distance Scaling Method to Improve Density-Based Clustering", in PAKDD2018 proceedings: https://doi.org/10.1007/978-3-319-93040-4_31.
    Downloads: 0 This Week
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  • 8
    GPLAB is a Genetic Programming Toolbox for MATLAB
    Downloads: 2 This Week
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  • 9
    This project aims to develop and share fast frequent subgraph mining and graph learning algorithms. Currently we release the frequent subgraph mining package FFSM and later we will include new functions for graph regression and classification package
    Downloads: 0 This Week
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  • 10
    All future developments will be implemented in the new MATLAB toolbox SciXMiner, please visit https://sourceforge.net/projects/scixminer/ to download the newest version. The former Matlab toolbox Gait-CAD was designed for the visualization and analysis of time series and features with a special focus to data mining problems including classification, regression, and clustering.
    Downloads: 2 This Week
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  • 11
    Density-ratio based clustering

    Density-ratio based clustering

    Discovering clusters with varying densities

    This site provides the source code of two approaches for density-ratio based clustering, used for discovering clusters with varying densities. One approach is to modify a density-based clustering algorithm to do density-ratio based clustering by using its density estimator to compute density-ratio. The other approach involves rescaling the given dataset only. An existing density-based clustering algorithm, which is applied to the rescaled dataset, can find all clusters with varying...
    Downloads: 0 This Week
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  • 12
    Mass-based dissimilarity

    Mass-based dissimilarity

    A data dependent dissimilarity measure based on mass estimation.

    This software calculates the mass-based dissimilarity matrix for data mining algorithms relying on a distance measure. References: Overcoming Key Weaknesses of Distance-based Neighbourhood Methods using a Data Dependent Dissimilarity Measure. KDD 2016 http://dx.doi.org/10.1145/2939672.2939779 The source code, presentation slide and poster are attached under "Files". The presentation video in KDD 2016 is published on https://youtu.be/eotD_-SuEoo . Since this software is licensed...
    Downloads: 0 This Week
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  • 13
    This site contains four packages of Mass and mass-based density estimation. 1. The first package is about the basic mass estimation (including one-dimensional mass estimation and Half-Space Tree based multi-dimensional mass estimation). This packages contains the necessary codes to run on MATLAB. 2. The second package includes source and object files of DEMass-DBSCAN to be used with the WEKA system. 3. The third package DEMassBayes includes the source and object files of a Bayesian...
    Downloads: 0 This Week
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  • 14

    JAABA

    The Janelia Automated Animal Behavior Annotator

    The Janelia Automatic Animal Behavior Annotator (JAABA) is a machine learning-based system that enables researchers to automatically compute interpretable, quantitative statistics describing video of behaving animals. Through our system, users encode their intuition about the structure of behavior by labeling the behavior of the animal, e.g. walking, grooming, or following, in a small set of video frames. JAABA uses machine learning techniques to convert these manual labels into behavior...
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    Downloads: 6 This Week
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  • 15
    nn22 Basic Neural Networks for Octave

    nn22 Basic Neural Networks for Octave

    Simple .m files, Basic Neural Networks study for Octave (or Matlab)

    --> For a more detailed description check the README text under the 'Files' menu option :) The project consists of a few very simple .m files for a Basic Neural Networks study under Octave (or Matlab). The idea is to provide a context for beginners that will allow to develop neural networks, while at the same time get to see and feel the behavior of a basic neural networks' functioning. The code is completely open to be modified and may suit several scenarios. The code...
    Downloads: 0 This Week
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  • 16

    High-order HMM in Matlab

    Implementation of duration high-order hidden Markov model in Matlab.

    Implementation of duration high-order hidden Markov model (DHO-HMM) in Matlab with application in speech recognition.
    Downloads: 0 This Week
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  • 17
    Matlab Community Detection Toolbox

    Matlab Community Detection Toolbox

    CDTB is a MATLAB toolbox which performs Community Detection

    We present the Community Detection Toolbox (CDTB), a MATLAB toolbox which can be used to perform community detection. The CDTB contains several functions from the following categories. 1. graph generators; 2. clustering algorithms; 2. cluster number selection functions; 4. clustering evaluation functions. Furthermore, CDTB is designed in a parametric manner so that the user can add his own functions and extensions. The CDTB can be used in at least three ways. The user can employ...
    Downloads: 0 This Week
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  • 18

    MCTIMME

    Microbial Counts Trajectories Infinite Mixture Model Engine

    MCTIMME is a nonparametric Bayesian computational framework for analyzing microbial time-series data.The current implementation is in Matlab.
    Downloads: 0 This Week
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  • 19
    ECOC PAK is a C++ Library for the Error Correcting Output Codes classification framework. It supports several coding and decoding strategies as well as several classifiers.
    Downloads: 0 This Week
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  • 20

    lonestar

    A feature selection and classification algorithm based on L1 Norm SVM

    A feature selection and classification algorithm. It is based on L1 Norm Support Vector Machine with t-test and Recursive Feature Elimination.
    Downloads: 0 This Week
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  • 21
    This is a Matlab software package for single molecule FRET data analysis.
    Downloads: 6 This Week
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  • 22
    Computer Vision Application.
    Downloads: 0 This Week
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  • 23

    DHAC distribution

    DHAC distribution version

    DHAC distribution
    Downloads: 0 This Week
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  • 24
    DOGMA is a MATLAB toolbox for discriminative online learning. It implements all the state of the art algorithms in a unique and simple framework. Examples are Perceptron, Passive-Aggresive, ALMA, NORMA, SILK, Projectron, RBP, Banditron, etc.
    Downloads: 0 This Week
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  • 25
    This project is devoted to the creation of an open source Error-Correcting Output Codes (ECOC) library for the Machine Learning community. The ECOC framework is a powerful tool to deal with multi-class categorization problems.
    Downloads: 0 This Week
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