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Armadillo
fast C++ library for linear algebra & scientific computing
... * Downloads: http://arma.sourceforge.net/download.html * Documentation: http://arma.sourceforge.net/docs.html * Bug reports: http://arma.sourceforge.net/faq.html * Git repo: https://gitlab.com/conradsnicta/armadillo-code -
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CometAnalyser
CometAnalyser, for quantitative comet assay analysis.
...It works with Windows, Macintosh, and UNIX-based systems. Please, download the sample datasets and test it watching the video tutorial to understand how it works: https://www.youtube.com/watch?v=vh2VFnMw50A Contacts: filippo.piccinini85@gmail.com beleonattila@gmail.com -
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Eventer
Rapid, unbiased, reproducible analysis of synaptic events
...The software is coded in MATLAB, but has been compiled as standalone applications for Windows, Mac and Linux. Please visit the official Eventer website for more info https://eventerneuro.netlify.app/ While the paper is in preparation, please cite as; Winchester, G., Liu, S., Steele, O.G., Aziz, W. and Penn, A.C. (2020) Eventer. Software for the detection of spontaneous synaptic events measured by electrophysiology or imaging. http://doi.org/10.5281/zenodo.3991676 -
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mTRF-Toolbox
A MATLAB package for modelling multivariate stimulus-response data
...It can be used to model the functional relationship between neuronal populations and dynamic sensory inputs such as natural scenes and sounds, or build neural decoders for reconstructing stimulus features and developing real-time applications such as brain-computer interfaces (BCIs). Toolbox Paper: http://dx.doi.org/10.3389/fnhum.2016.00604 Methods Paper: https://doi.org/10.3389/fnins.2021.705621 -
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...This software is under GNU General Public License version 3.0 (GPLv3) This code is a demo of method described by the following publication: Zhu, Y., Ting, K.M., Carman, M. and Angelova, M., 2021, April. CDF Transform-and-Shift: An effective way to deal with datasets of inhomogeneous cluster densities. Pattern Recognition. https://doi.org/10.1016/j.patcog.2021.107977 The preprint version can be obtained at: https://arxiv.org/abs/1810.02897
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Isolation‐based anomaly detection
Isolation‐based anomaly detection using nearest‐neighbor ensembles
This site provides the source code of Isolation‐based anomaly detection (iNNE). https://onlinelibrary.wiley.com/doi/abs/10.1111/coin.12156 Bandaragoda, T.R., Ting, K.M., Albrecht, D., Liu, F.T., Zhu, Y. and Wells, J.R., 2018. Isolation‐based anomaly detection using nearest‐neighbor ensembles. Computational Intelligence, 34(4), pp.968-998. -
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Isolation Similarity
aNNE similarity based on Isolation Kernel
...Nearest-neighbour-induced isolation similarity and its impact on density-based clustering. In Proceedings of the AAAI Conference on Artificial Intelligence (Vol. 33, pp. 4755-4762). https://ojs.aaai.org//index.php/AAAI/article/view/4402 Bibtex format: @inproceedings{qin2019nearest, title={Nearest-neighbour-induced isolation similarity and its impact on density-based clustering}, author={Qin, Xiaoyu and Ting, Kai Ming and Zhu, Ye and Lee, Vincent CS}, booktitle={Proceedings of the AAAI Conference on Artificial Intelligence}, volume={33}, pages={4755--4762}, year={2019} } -
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Phenalysis
Analyze agronomic plant research plots in aerial orthomosaic images.
...Please cite the following reference in your work if you use Phenalysis: Khan Z and Miklavcic SJ (2019) An Automatic Field Plot Extraction Method From Aerial Orthomosaic Images. Front. Plant Sci. 10:683. doi: https://doi.org/10.3389/fpls.2019.00683 This tool is being developed through the sponsorship of the Australian Research Council's Industrial Transformation Research Hub on Wheat in a Hot and Dry Climate. https://www.wheathub.com.au/ -
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Distance Scaling
A Distance Scaling Method to Improve Density-Based Clustering
These functions implement a distance scaling method, proposed by Ye Zhu, Kai Ming Ting, and Maia Angelova, "A Distance Scaling Method to Improve Density-Based Clustering", in PAKDD2018 proceedings: https://doi.org/10.1007/978-3-319-93040-4_31. -
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Clustering by Shared Subspaces
Grouping Points by Shared Subspaces for Effective Subspace Clustering
These functions implement a subspace clustering algorithm, proposed by Ye Zhu, Kai Ming Ting, and Mark J. Carman: "Grouping Points by Shared Subspaces for Effective Subspace Clustering", Published in Pattern Recognition Journal at https://doi.org/10.1016/j.patcog.2018.05.027 -
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All future developments will be implemented in the new MATLAB toolbox SciXMiner, please visit https://sourceforge.net/projects/scixminer/ to download the newest version. The former Matlab toolbox Gait-CAD was designed for the visualization and analysis of time series and features with a special focus to data mining problems including classification, regression, and clustering.
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Mass-based dissimilarity
A data dependent dissimilarity measure based on mass estimation.
...KDD 2016 http://dx.doi.org/10.1145/2939672.2939779 The source code, presentation slide and poster are attached under "Files". The presentation video in KDD 2016 is published on https://youtu.be/eotD_-SuEoo . Since this software is licensed under the Gnu General Public license GPLv3, any derivative work must be licensed under the GPL as well. This software is free only for non-commercial use. For commercial projects, it is possible to obtain a commercial license through the Commercial Services of Federation University Australia. ... -
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Kernel Adaptive Filtering Toolbox
a Matlab benchmarking toolbox for kernel adaptive filtering
[Note: This project has moved. Visit https://github.com/steven2358/kafbox/ for the latest version.] A Matlab benchmarking toolbox for kernel adaptive filtering. Kernel adaptive filtering algorithms are online and adaptive regression algorithms based on kernels. They are suitable for nonlinear filtering, prediction, tracking and nonlinear regression in general. This toolbox includes algorithms, demos, and tools to compare their performance.
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