Showing 13 open source projects for "data analysis free"

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  • 1
    CometAnalyser

    CometAnalyser

    CometAnalyser, for quantitative comet assay analysis.

    Description: Comet assay provides an easy solution to estimate DNA damage in single cells through microscopy assessment. To obtain reproducible and reliable quantitative data, we developed an easy-to-use tool named CometAnalyser. CometAnalyser is an open-source deep-learning tool designed for the analysis of both fluorescent and silver-stained wide-field microscopy images. Once the comets are segmented and classified, several intensity/morphological features are automatically exported as a spreadsheet file. ...
    Downloads: 17 This Week
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  • 2
    mTRF-Toolbox

    mTRF-Toolbox

    A MATLAB package for modelling multivariate stimulus-response data

    mTRF-Toolbox is a MATLAB package for modelling multivariate stimulus-response data, suitable for neurophysiological data such as MEG, EEG, sEEG, ECoG and EMG. It can be used to model the functional relationship between neuronal populations and dynamic sensory inputs such as natural scenes and sounds, or build neural decoders for reconstructing stimulus features and developing real-time applications such as brain-computer interfaces (BCIs). Toolbox Paper: ...
    Downloads: 6 This Week
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  • 3
    Eventer

    Eventer

    Rapid, unbiased, reproducible analysis of synaptic events

    ...The software combines deconvolution for detection, and variable length template matching approaches for screening out false positive events. Eventer also includes a machine learning-based approach allowing users to train a model to implement their ‘expert’ selection criteria across data sets without bias. Sharing models allows users to implement consistent analysis procedures. The software is coded in MATLAB, but has been compiled as standalone applications for Windows, Mac and Linux. Please visit the official Eventer website for more info https://eventerneuro.netlify.app/ While the paper is in preparation, please cite as; Winchester, G., Liu, S., Steele, O.G., Aziz, W. and Penn, A.C. (2020) Eventer. ...
    Downloads: 2 This Week
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  • 4
    Spheroid_segmentation

    Spheroid_segmentation

    Deep learning networks for spheroid segmentation

    To accelerate the analysis of tumors' spheroids, different deep learning networks were trained to automatize the segmentation process. The code provides the trained networks based on Vgg16, Vgg19, ResNet18, and ResNet50 ready to be used for segmentation purposes. It also provides Matlab functions ready to be used to train new networks, segment new images, and measure the quality of the training using different quantitative parameters.
    Downloads: 0 This Week
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  • 5
    Isolation Similarity

    Isolation Similarity

    aNNE similarity based on Isolation Kernel

    Demo of using aNNE similarity for DBSCAN. Written by Xiaoyu Qin, Monash University, March 2019, version 1.0 This software is under GNU General Public License version 3.0 (GPLv3) This code is a demo of method described by the following publication: Qin, X., Ting, K.M., Zhu, Y. and Lee, V.C., 2019, July. Nearest-neighbour-induced isolation similarity and its impact on density-based clustering. In Proceedings of the AAAI Conference on Artificial Intelligence (Vol. 33, pp....
    Downloads: 0 This Week
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  • 6
    Phenalysis

    Phenalysis

    Analyze agronomic plant research plots in aerial orthomosaic images.

    A graphical user interface to import, analyze and export plots from orthomosaic images of agronomic trials. Please cite the following reference in your work if you use Phenalysis: Khan Z and Miklavcic SJ (2019) An Automatic Field Plot Extraction Method From Aerial Orthomosaic Images. Front. Plant Sci. 10:683. doi: https://doi.org/10.3389/fpls.2019.00683 This tool is being developed through the sponsorship of the Australian Research Council's Industrial Transformation Research Hub on...
    Downloads: 0 This Week
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  • 7

    OpenFace

    A state-of-the-art facial behavior analysis toolkit

    OpenFace is an advanced facial behavior analysis toolkit intended for computer vision and machine learning researchers, those in the affective computing community, and those who are simply interested in creating interactive applications based on facial behavior analysis. The OpenFace toolkit is capable of performing several complex facial analysis tasks, including facial landmark detection, eye-gaze estimation, head pose estimation and facial action unit recognition. OpenFace is able to...
    Downloads: 28 This Week
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  • 8
    All future developments will be implemented in the new MATLAB toolbox SciXMiner, please visit https://sourceforge.net/projects/scixminer/ to download the newest version. The former Matlab toolbox Gait-CAD was designed for the visualization and analysis of time series and features with a special focus to data mining problems including classification, regression, and clustering.
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    Downloads: 9 This Week
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  • 9
    Mass-based dissimilarity

    Mass-based dissimilarity

    A data dependent dissimilarity measure based on mass estimation.

    This software calculates the mass-based dissimilarity matrix for data mining algorithms relying on a distance measure. References: Overcoming Key Weaknesses of Distance-based Neighbourhood Methods using a Data Dependent Dissimilarity Measure. KDD 2016 http://dx.doi.org/10.1145/2939672.2939779 The source code, presentation slide and poster are attached under "Files". The presentation video in KDD 2016 is published on https://youtu.be/eotD_-SuEoo .
    Downloads: 0 This Week
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  • 10
    This site contains four packages of Mass and mass-based density estimation. 1. The first package is about the basic mass estimation (including one-dimensional mass estimation and Half-Space Tree based multi-dimensional mass estimation). This packages contains the necessary codes to run on MATLAB. 2. The second package includes source and object files of DEMass-DBSCAN to be used with the WEKA system. 3. The third package DEMassBayes includes the source and object files of a Bayesian...
    Downloads: 1 This Week
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  • 11
    Matlab Community Detection Toolbox

    Matlab Community Detection Toolbox

    CDTB is a MATLAB toolbox which performs Community Detection

    We present the Community Detection Toolbox (CDTB), a MATLAB toolbox which can be used to perform community detection. The CDTB contains several functions from the following categories. 1. graph generators; 2. clustering algorithms; 2. cluster number selection functions; 4. clustering evaluation functions. Furthermore, CDTB is designed in a parametric manner so that the user can add his own functions and extensions. The CDTB can be used in at least three ways. The user can employ...
    Downloads: 0 This Week
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  • 12
    This is a Matlab software package for single molecule FRET data analysis.
    Downloads: 2 This Week
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  • 13
    This project applies an interpretation of a k-NN algorithm to a library of GPS commuter data for speed prediction. The overall goal is to lay the foundation for a power management protocol for use in electric vehicles with hybrid energy storage.
    Downloads: 0 This Week
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