Search Results for "sensitivity"
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Showing 2 open source projects for "sensitivity"
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PyTorch Implementation of SDE Solvers
Differentiable SDE solvers with GPU support and efficient sensitivity
This library provides stochastic differential equation (SDE) solvers with GPU support and efficient backpropagation. examples/demo.ipynb gives a short guide on how to solve SDEs, including subtle points such as fixing the randomness in the solver and the choice of noise types. examples/latent_sde.py learns a latent stochastic differential equation, as in Section 5 of [1]. The example fits an SDE to data, whilst regularizing it to be like an Ornstein-Uhlenbeck prior process. The model can be... -
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FineSplice
Enhanced splice junction detection and estimation from RNA-Seq data
FineSplice is a Python wrapper to TopHat2 geared towards a reliable identification of expressed exon junctions from RNA-Seq data, at enhanced detection precision with small loss in sensitivity. Following alignment with TopHat2 using known transcript annotations, FineSplice takes as input the resulting BAM file and outputs a confident set of expressed splice junctions with the corresponding read counts. Potential false positives arising from spurious alignments are filtered out via a semi-supervised anomaly detection strategy based on logistic regression. ...
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