Showing 470 open source projects for "open source assembly software source code"

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  • 1
    Python Machine Learning book

    Python Machine Learning book

    The book code repository and info resource

    What you can expect are 400 pages rich in useful material just about everything you need to know to get started with machine learning. From theory to the actual code that you can directly put into action! This is not yet just another "this is how scikit-learn works" book. I aim to explain all the underlying concepts, tell you everything you need to know in terms of best practices and caveats, and we will put those concepts into action mainly using NumPy, scikit-learn, and Theano. This is not...
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  • 2
    node-opencv

    node-opencv

    OpenCV Bindings for node.js

    OpenCV bindings for Node.js. OpenCV is the defacto computer vision library - by interfacing with it natively in node, we get powerful real time vision in js. People are using node-opencv to fly control quadrocoptors, detect faces from webcam images and annotate video streams. If you're using it for something cool, I'd love to hear about it! You'll need OpenCV 2.3.1 or newer installed before installing node-opencv. You can use opencv to read in image files. Supported formats are in the OpenCV...
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  • 3
    Spark Python Notebooks

    Spark Python Notebooks

    Apache Spark & Python (pySpark) tutorials for Big Data Analysis

    Spark Python Notebooks is a curated collection of example Jupyter notebooks designed to help developers and data engineers learn Apache Spark using Python in an interactive environment. Rather than only providing static code files, this project uses notebooks to teach practical data processing workflows, exposing users to real Spark programming patterns like working with RDDs, DataFrames, and distributed computations. These notebooks often demonstrate how to transform, analyze, and visualize...
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  • 4
    Density-ratio based clustering

    Density-ratio based clustering

    Discovering clusters with varying densities

    This site provides the source code of two approaches for density-ratio based clustering, used for discovering clusters with varying densities. One approach is to modify a density-based clustering algorithm to do density-ratio based clustering by using its density estimator to compute density-ratio. The other approach involves rescaling the given dataset only. An existing density-based clustering algorithm, which is applied to the rescaled dataset, can find all clusters with varying...
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  • 5
    Mass-based dissimilarity

    Mass-based dissimilarity

    A data dependent dissimilarity measure based on mass estimation.

    This software calculates the mass-based dissimilarity matrix for data mining algorithms relying on a distance measure. References: Overcoming Key Weaknesses of Distance-based Neighbourhood Methods using a Data Dependent Dissimilarity Measure. KDD 2016 http://dx.doi.org/10.1145/2939672.2939779 The source code, presentation slide and poster are attached under "Files".
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  • 6
    Apache PredictionIO

    Apache PredictionIO

    Machine learning server for developers and ML engineers

    Apache PredictionIO® is an open source Machine Learning Server built on top of a state-of-the-art open source stack for developers and data scientists to create predictive engines for any machine learning task. Quickly build and deploy an engine as a web service on production with customizable templates; respond to dynamic queries in real-time once deployed as a web service; evaluate and tune multiple engine variants systematically; unify data from multiple platforms in batch or in real-time...
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  • 7
    JCLAL

    JCLAL

    A Java Class Library for Active Learning

    JCLAL is a general purpose framework developed in Java for the active learning research area. JCLAL framework is open source software and it is distributed under the GNU general public license. It is constructed with a high-level software environment, with a strong object oriented design and use of design patterns, which allow to the developers reuse, modify and extend the framework. If you want to refer to JCLAL in a publication, please cite the following JMLR paper. ...
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  • 8
    Convolution arithmetic

    Convolution arithmetic

    A technical report on convolution arithmetic in deep learning

    A technical report on convolution arithmetic in the context of deep learning. The code and the images of this tutorial are free to use as regulated by the licence and subject to proper attribution. The animations will be output to the gif directory. Individual animation steps will be output in PDF format to the pdf directory and in PNG format to the png directory. We introduce a guide to help deep learning practitioners understand and manipulate convolutional neural network architectures....
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  • 9
    BPL

    BPL

    Bayesian Program Learning model for one-shot learning

    BPL (Bayesian Program Learning) is a MATLAB implementation of the Bayesian Program Learning framework for one-shot concept learning (especially on handwritten characters). The approach treats each concept (e.g. a character) as being generated by a probabilistic program (motor primitives, strokes, spatial relationships), and inference proceeds by fitting those generative programs to a single example, generalizing to new examples, and generating new exemplars. The repository contains code for...
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  • 10
    libcrn is document image processing library written in C++11 for Linux, Windows, Mac OsX and Google Android. It is a toolbox that allows to create easily software such as OCRs and layout analysis tools.
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  • 11
    This site contains four packages of Mass and mass-based density estimation. 1. The first package is about the basic mass estimation (including one-dimensional mass estimation and Half-Space Tree based multi-dimensional mass estimation). This packages contains the necessary codes to run on MATLAB. 2. The second package includes source and object files of DEMass-DBSCAN to be used with the WEKA system. 3. The third package DEMassBayes includes the source and object files of a Bayesian...
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  • 12
    GUAJE FUZZY

    GUAJE FUZZY

    Free software for generating understandable and accurate fuzzy systems

    GUAJE stands for Generating Understandable and Accurate fuzzy models in a Java Environment. Thus, it is a free software tool (licensed under GPL-v3) with the aim of supporting the design of interpretable and accurate fuzzy systems by means of combining several preexisting open source tools, taking profit from the main advantages of all of them. It is a user-friendly portable tool designed and developed in order to make easier knowledge extraction and representation for fuzzy systems, paying special attention to interpretability issues. ...
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  • 13

    JCLALwebservice

    Web service for JCLAL

    This work is part of the area of Artificial Intelligence, in particular in the field of machine learning. The web service is built to facilitate the use of JCLAL in applications developed in any programming language. Users should know only the basic format to send and receive requests.
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  • 14

    JCLALtext

    Text processing module for JCLAL

    JCLALtext is a class library designed to extend the framework JCLAL text tasks. JCLALtext is free, open source and developed with the Java programming language. JCLALtext is distributed under the GNU license. The researcher can use the class library by adding it to your project.
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  • 15
    AlgoWiki

    AlgoWiki

    Repository which contains links and resources on different topics

    AlgoWiki is an open educational repository that aggregates a large collection of curated resources covering many areas of computer science, programming, and algorithmic problem solving. The project functions as a structured knowledge index that links to tutorials, articles, courses, and research materials across numerous technical domains. Topics include algorithms, machine learning, artificial intelligence, programming languages, web development, and software engineering practices. The...
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  • 16

    SuRankCo

    Supervised Ranking of Contigs in de novo Assemblies

    SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of contigs with known reference genomes and predicts scores and ranking for contigs which have no related reference genome yet. For more details about SuRankCo and its functioning, please see "SuRankCo: Supervised Ranking of Contigs in de novo Assemblies" Mathias Kuhring, Piotr Wojtek Dabrowski, Andreas Nitsche and Bernhard Y....
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  • 17
    nn22 Basic Neural Networks for Octave

    nn22 Basic Neural Networks for Octave

    Simple .m files, Basic Neural Networks study for Octave (or Matlab)

    --> For a more detailed description check the README text under the 'Files' menu option :) The project consists of a few very simple .m files for a Basic Neural Networks study under Octave (or Matlab). The idea is to provide a context for beginners that will allow to develop neural networks, while at the same time get to see and feel the behavior of a basic neural networks' functioning. The code is completely open to be modified and may suit several scenarios. The code...
    Downloads: 2 This Week
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  • 18

    Automatic cell lineage reconstruction

    Automatic segmentation and tracking for 3D time-lapse microscopy

    From Amat et al., Nature Methods, 2014*: "The comprehensive reconstruction of cell lineages in complex multicellular organisms is a central goal of developmental biology. We present an open-source computational framework for segmentation and tracking of cell nuclei with high accuracy and speed. We demonstrate its (1) generality, by reconstructing cell lineages in four-dimensional, terabyte-sized image data of fruit-fly, zebrafish and mouse embryos, acquired with three different types of fluorescence microscopes, (2) scalability, by analyzing advanced stages of development with up to 20,000 cells per time point, at 26,000 cells min-1 on a single computer workstation, and (3) ease of use, by adjusting only two parameters across all data sets and providing visualization and editing tools for efficient data curation. ...
    Downloads: 4 This Week
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  • 19

    Fingerprint Recognition System

    Fingerprint Recognition System 5.3 - Matlab source code

    The proposed filter-based algorithm uses a bank of Gabor filters to capture both local and global details in a fingerprint as a compact fixed length FingerCode. The fingerprint matching is based on the Euclidean distance between the two corresponding FingerCodes and hence is extremely fast. We are able to achieve a verification accuracy which is only marginally inferior to the best results of minutiae-based algorithms published in the open literature. Our system performs better than a...
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  • 20
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  • 21

    LWPR

    Locally Weighted Projection Regression (LWPR)

    Locally Weighted Projection Regression (LWPR) is a fully incremental, online algorithm for non-linear function approximation in high dimensional spaces, capable of handling redundant and irrelevant input dimensions. At its core, it uses locally linear models, spanned by a small number of univariate regressions in selected directions in input space. A locally weighted variant of Partial Least Squares (PLS) is employed for doing the dimensionality reduction. Please cite: [1] Sethu...
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  • 22
    Marsyas (Music Analysis, Retrieval and Synthesis for Audio Signals) is a framework for developing systems for audio processing. It provides an general architecture for connecting audio, soundfiles, signal processing blocks and machine learning. Source code at SF is outdated! Marsyas is now hosted at GitHub: https://github.com/marsyas/marsyas Downloads are now provided at Bintray: https://bintray.com/marsyas
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  • 23

    KMeansAniX

    Animation of kmeans clustering using X Window System

    Open source animation of kmeans clustering in X Window System using the C++ libplotter library. Supports Linux, Mac, and BSD. Includes common initialization methods such as Forgy, Macqueen, random, and angular. Sample videos are available through the Files Tab above. The SVN repo is accessible thorugh the Code Tab above. Requires a C++ compiler, libplot-dev, and libncurses5-dev Mac alternative to libplot-dev: macports plotutils +x11
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  • 24
    ConvNetJS

    ConvNetJS

    Deep learning in Javascript to train convolutional neural networks

    ConvNetJS is a Javascript library for training Deep Learning models (Neural Networks) entirely in your browser. Open a tab and you're training. No software requirements, no compilers, no installations, no GPUs, no sweat. ConvNetJS is an implementation of Neural networks, together with nice browser-based demos. It currently supports common Neural Network modules (fully connected layers, non-linearities), classification (SVM/Softmax) and Regression (L2) cost functions, ability to specify and...
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  • 25
    Qix

    Qix

    Machine Learning, Deep Learning, PostgreSQL, Distributed System

    Qix is an open-source repository that aggregates resources related to artificial intelligence, machine learning, and deep learning development. The project is designed as a curated index of useful tools, frameworks, research papers, and learning materials that developers can use to explore the AI ecosystem. It organizes information about libraries, tutorials, datasets, and software tools used in modern AI research and development.
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