Search Results for "bcftools-windows" - Page 7
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Showing 1284 open source projects for "bcftools-windows"
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segment-geospatial
A Python package for segmenting geospatial data with the SAM
The segment-geospatial package draws its inspiration from segment-anything-eo repository authored by Aliaksandr Hancharenka. To facilitate the use of the Segment Anything Model (SAM) for geospatial data, I have developed the segment-anything-py and segment-geospatial Python packages, which are now available on PyPI and conda-forge. My primary objective is to simplify the process of leveraging SAM for geospatial data analysis by enabling users to achieve this with minimal coding effort. I... -
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EconML
Python Package for ML-Based Heterogeneous Treatment Effects Estimation
EconML is a Python package for estimating heterogeneous treatment effects from observational data via machine learning. This package was designed and built as part of the ALICE project at Microsoft Research with the goal of combining state-of-the-art machine learning techniques with econometrics to bring automation to complex causal inference problems. One of the biggest promises of machine learning is to automate decision-making in a multitude of domains. At the core of many data-driven... -
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TPOT
A Python Automated Machine Learning tool that optimizes ML
Consider TPOT your Data Science Assistant. TPOT is a Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming. TPOT stands for Tree-based Pipeline Optimization Tool. Consider TPOT your Data Science Assistant. TPOT is a Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming. -
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TensorRT Backend For ONNX
ONNX-TensorRT: TensorRT backend for ONNX
Parses ONNX models for execution with TensorRT. Development on the main branch is for the latest version of TensorRT 8.4.1.5 with full dimensions and dynamic shape support. For previous versions of TensorRT, refer to their respective branches. Building INetwork objects in full dimensions mode with dynamic shape support requires calling the C++ and Python API. Current supported ONNX operators are found in the operator support matrix. For building within docker, we recommend using and setting... -
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BentoML
Unified Model Serving Framework
BentoML simplifies ML model deployment and serves your models at a production scale. Support multiple ML frameworks natively: Tensorflow, PyTorch, XGBoost, Scikit-Learn and many more! Define custom serving pipeline with pre-processing, post-processing and ensemble models. Standard .bento format for packaging code, models and dependencies for easy versioning and deployment. Integrate with any training pipeline or ML experimentation platform. Parallelize compute-intense model inference... -
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Transformer Engine
A library for accelerating Transformer models on NVIDIA GPUs
Transformer Engine (TE) is a library for accelerating Transformer models on NVIDIA GPUs, including using 8-bit floating point (FP8) precision on Hopper GPUs, to provide better performance with lower memory utilization in both training and inference. TE provides a collection of highly optimized building blocks for popular Transformer architectures and an automatic mixed precision-like API that can be used seamlessly with your framework-specific code. TE also includes a framework-agnostic C++... -
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Vearch
A distributed system for embedding-based vector retrieval
Vearch is the vector search infrastructure for deep learning and AI applications. Vearch is a distributed vector storage and retrieval system which can be easily extended to billions scale. Vearch implements a high-performance, lockless real-time vector indexing subsystem that utilizes various optimization techniques to support millisecond vector update and retrieval. End-to-end one-click deployment. Through the module of the plugin, a complete default visual search system can be deployed... -
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DeepVariant
DeepVariant is an analysis pipeline that uses a deep neural networks
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. DeepVariant is a deep learning-based variant caller that takes aligned reads (in BAM or CRAM format), produces pileup image tensors from them, classifies each tensor using a convolutional neural network, and finally reports the results in a standard VCF or gVCF file. DeepTrio is a deep learning-based trio variant caller built on top of DeepVariant. DeepTrio... -
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Interpretable machine learning
Book about interpretable machine learning
This book is about interpretable machine learning. Machine learning is being built into many products and processes of our daily lives, yet decisions made by machines don't automatically come with an explanation. An explanation increases the trust in the decision and in the machine learning model. As the programmer of an algorithm you want to know whether you can trust the learned model. Did it learn generalizable features? Or are there some odd artifacts in the training data which the... -
Host LLMs in Production With On-Demand GPUsDeploy your model, get an endpoint, pay only for compute time. No GPU provisioning or infrastructure management required.
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pmdarima
Statistical library designed to fill the void in Python's time series
A statistical library designed to fill the void in Python's time series analysis capabilities, including the equivalent of R's auto.arima function. -
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GPflow
Gaussian processes in TensorFlow
GPflow is a package for building Gaussian process models in Python. It implements modern Gaussian process inference for composable kernels and likelihoods. GPflow builds on TensorFlow 2.4+ and TensorFlow Probability for running computations, which allows fast execution on GPUs. -
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nlpaug
Data augmentation for NLP
This Python library helps you with augmenting nlp for your machine learning projects. Visit this introduction to understand Data Augmentation in NLP. Augmenter is the basic element of augmentation while Flow is a pipeline to orchestra multi augmenters together. -
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Koila
Prevent PyTorch's `CUDA error: out of memory` in just 1 line of code
Koila is a lightweight Python library designed to help developers avoid memory errors when training deep learning models with PyTorch. The library introduces a lazy evaluation mechanism that delays computation until it is actually required, allowing the framework to better estimate the memory requirements of a model before execution. By building a computational graph first and executing operations only when necessary, koila reduces the risk of running out of GPU memory during the forward... -
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Orion
A machine learning library for detecting anomalies in signals
Orion is a machine-learning library built for unsupervised time series anomaly detection. Such signals are generated by a wide variety of systems, few examples include telemetry data generated by satellites, signals from wind turbines, and even stock market price tickers. We built this to provide one place where users can find the latest and greatest in machine learning and deep learning world including our own innovations. Abstract away from the users the nitty-gritty about preprocessing,... -
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Transformers
State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX
Hugging Face Transformers provides APIs and tools to easily download and train state-of-the-art pre-trained models. Using pre-trained models can reduce your compute costs, carbon footprint, and save you the time and resources required to train a model from scratch. These models support common tasks in different modalities. Text, for tasks like text classification, information extraction, question answering, summarization, translation, text generation, in over 100 languages. Images, for tasks... -
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Audiomentations
A Python library for audio data augmentation
A Python library for audio data augmentation. Inspired by albumentations. Useful for deep learning. Runs on CPU. Supports mono audio and multichannel audio. Can be integrated in training pipelines in e.g. Tensorflow/Keras or Pytorch. Has helped people get world-class results in Kaggle competitions. Is used by companies making next-generation audio products. Mix in another sound, e.g. a background noise. Useful if your original sound is clean and you want to simulate an environment where... -
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CUTLASS
CUDA Templates for Linear Algebra Subroutines
CUTLASS is a collection of CUDA C++ template abstractions for implementing high-performance matrix-multiplication (GEMM) and related computations at all levels and scales within CUDA. It incorporates strategies for hierarchical decomposition and data movement similar to those used to implement cuBLAS and cuDNN. CUTLASS decomposes these "moving parts" into reusable, modular software components abstracted by C++ template classes. These thread-wide, warp-wide, block-wide, and device-wide... -
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Pandas Profiling
Create HTML profiling reports from pandas DataFrame objects
pandas-profiling generates profile reports from a pandas DataFrame. The pandas df.describe() function is handy yet a little basic for exploratory data analysis. pandas-profiling extends pandas DataFrame with df.profile_report(), which automatically generates a standardized univariate and multivariate report for data understanding. High correlation warnings, based on different correlation metrics (Spearman, Pearson, Kendall, Cramér’s V, Phik). Most common categories (uppercase, lowercase,... -
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gensim
Topic Modelling for Humans
Gensim is a Python library for topic modeling, document indexing, and similarity retrieval with large corpora. The target audience is the natural language processing (NLP) and information retrieval (IR) community. -
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DeepDetect
Deep Learning API and Server in C++14 support for Caffe, PyTorch
The core idea is to remove the error sources and difficulties of Deep Learning applications by providing a safe haven of commoditized practices, all available as a single core. While the Open Source Deep Learning Server is the core element, with REST API, and multi-platform support that allows training & inference everywhere, the Deep Learning Platform allows higher level management for training neural network models and using them as if they were simple code snippets. Ready for applications... -
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Gradio
Create UIs for your machine learning model in Python in 3 minutes
Gradio is the fastest way to demo your machine learning model with a friendly web interface so that anyone can use it, anywhere! Gradio can be installed with pip. Creating a Gradio interface only requires adding a couple lines of code to your project. You can choose from a variety of interface types to interface your function. Gradio can be embedded in Python notebooks or presented as a webpage. A Gradio interface can automatically generate a public link you can share with colleagues that... -
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Robyn
Experimental, AI/ML-powered and open sourced Marketing Mix Modeling
Robyn is an open-source, AI/ML-powered Marketing Mix Modeling (MMM) toolkit developed by Meta Marketing Science under the “facebookexperimental” GitHub umbrella. Its goal is to democratize rigorous MMM: what traditionally required expert statisticians and expensive consulting becomes accessible to any company with data. Robyn takes in historical data (spends on different marketing channels, conversions, or revenue, and optional context or organic-media variables) and uses a combination of... -
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mlforecast
Scalable machine learning for time series forecasting
mlforecast is a time-series forecasting framework built around machine-learning models, designed to make forecasting both efficient and scalable. It lets you apply any regressor that follows the typical scikit-learn API, for example, gradient-boosted trees or linear models, to time-series data by automating much of the messy feature engineering and data preparation. Instead of writing custom code to build lagged features, rolling statistics, and date-based predictors, mlforecast generates... -
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MiniSom
MiniSom is a minimalistic implementation of the Self Organizing Maps
MiniSom is a minimalistic and Numpy-based implementation of the Self Organizing Maps (SOM). SOM is a type of Artificial Neural Network able to convert complex, nonlinear statistical relationships between high-dimensional data items into simple geometric relationships on a low-dimensional display. Minisom is designed to allow researchers to easily build on top of it and to give students the ability to quickly grasp its details. The project initially aimed for a minimalistic implementation of... -
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TFX
TFX is an end-to-end platform for deploying production ML pipelines
TensorFlow Extended (TFX) is a Google-production-scale machine learning platform based on TensorFlow. It provides a configuration framework to express ML pipelines consisting of TFX components. TFX pipelines can be orchestrated using Apache Airflow and Kubeflow Pipelines. Both the components themselves and the integrations with orchestration systems can be extended. TFX components interact with an ML Metadata backend that keeps a record of component runs, input and output artifacts, and...
