Search Results for "gnu science" - Page 4
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Showing 169 open source projects for "gnu science"
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Java application for training and deploying text processing applications such as part-of-speech taggers, based on a re-implementation of Brill's algorithm in Java.
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MCTIMME
Microbial Counts Trajectories Infinite Mixture Model Engine
MCTIMME is a nonparametric Bayesian computational framework for analyzing microbial time-series data.The current implementation is in Matlab. -
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OpenANN
An open source library for artificial neural networks.
OpenANN is a C++ library that provides implementations for modular artificial neural networks with only a few dependencies and additional Python bindings. -
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iGREAT is an open-source, statistical machine translation software toolkit based on finite-state models.
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ECOC PAK is a C++ Library for the Error Correcting Output Codes classification framework. It supports several coding and decoding strategies as well as several classifiers.
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A High-Order Multi-Variate Approximation Scheme for Arbitrary Data Sets, C implementation of the method described in http://web.mit.edu/qiqi/www/paper/interpolation.pdf, with Python and Fortran interfaces.
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lonestar
A feature selection and classification algorithm based on L1 Norm SVM
A feature selection and classification algorithm. It is based on L1 Norm Support Vector Machine with t-test and Recursive Feature Elimination. -
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BreakDancer-0.0.1 is a Perl package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads.
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The Information Extraction Plugin allows the use of information extraction techniques within RapidMiner. It can be seen as an interface between natural language and IE- or datamining-methods, by extracting interesting information out of documents.
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ABC-DynF
Adaptive Bayesian Classifier with Dynamic Features
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AdPreqFr4SL
Adaptive Prequential Learning Framework
The AdPreqFr4SL learning framework for Bayesian Network Classifiers is designed to handle the cost / performance trade-off and cope with concept drift. Our strategy for incorporating new data is based on bias management and gradual adaptation. Starting with the simple Naive Bayes, we scale up the complexity by gradually updating attributes and structure. Since updating the structure is a costly task, we use new data to primarily adapt the parameters and only if this is really necessary, do we... -
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TreeLiker
TreeLiker is a collection of fast algorithms for working with complex
TreeLiker is a collection of fast algorithms for working with complex structured data in relational form. The data can, for example, describe large organic molecules such as proteins or groups of individuals such as social networks or predator-prey networks etc. The algorithms included in TreeLiker are unique in that, in principle, they are able to search given sets of relational patterns exhaustively, thus guaranteeing that if some good pattern capturing an important feature of the problem... -
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The AK toolkit is another kit for building and use Hidden Markov Models (HMMs). Originally developed for handwritten text recognition (HTR) using Bernoulli HMMs, it also implements diagonal Gaussians and can be used for any other purpose.
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Black Hole Cortex
Sphere surface layers of visual cortex approach maximum info density
Near the surface (even horizon) of a black hole, there is maximum information density in units of squared plancks (and some translation to qubits). Similarly, our imagination is the set of all possible things we can draw onto our most dense layer of visual cortex in electricity patterns. Bigger layers have more neurons to handle those possibilities. A Black Hole Cortex is a kind of visual cortex that has density of neuron layers similar to density at various radius from a black hole. What we... -
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NeuralGas
Self-organized learning
A collection of algorithms based on the topology preserving Neural Gas algorithm for density estimation/quantization/clustering/self-organized learning. I moved this project to GitHub: https://github.com/sergioroa/neuralgas -
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Swarm Wars
Safety in numbers.
REPOSITORY MOVED TO GITHUB: https://github.com/happyjack27/SwarmWars video sample: http://youtu.be/s5mLNbdBQGY A game where you evolve & compete AI swarms. The organisms use swarm intelligence & ant colony optimization. The organisms can communicate through 3-color signaling as well as by laying beacons. They can attack and repair other organisms. They can select mates, and they can gather and distribute food and material. This behavior is controlled by a genetically evolved... -
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EpochX is an open source genetic programming framework, specifically for analysing the properties of evolutionary automatic programming. It supports 3 popular representations - Strongly-Typed GP, Context-Free Grammar GP and Grammatical Evolution.
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DHAC distribution
DHAC distribution version
DHAC distribution -
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jaf_Kernels
Similarity Word-Sequence Kernels for Sentence Clustering toolkit
This project implements the techniques used in this paper: @INPROCEEDINGS{Andres10a, author = {Jesús Andrés-Ferrer and Germán Sanchis-Trilles and Francisco Casacuberta}, title = {Similarity Word-Sequence Kernels for Sentence Clustering}, booktitle = {Proceedings of the 8th International Workshop on Statistical Pattern Recognition}, year = {2010}, } This project depends on jaf_Utils: http://sourceforge.net/projects/jafutils/ Install it prior... -
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This Java software implements Profile Hidden Markov Models (PHMMs) for protein classification for the WEKA workbench. Standard PHMMs and newly introduced binary PHMMs are used. In addition the software allows propositionalisation of PHMMs.
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Nen
neural network implementation in java
3-layer neural network for regression and classification with sigmoid activation function and command line interface similar to LibSVM. Quick Start: "java -jar nen.jar" -
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Grid Computing MDR
Grid-enabled version of the MDR software
The objective of this project is to make available an open-source of a gridified version of the Multifactor Dimensionality Reduction (MDR) software (http://www.epistasis.org/software.html).
